Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 846 a.a., LPS-assembly protein LptD from Xanthobacter sp. DMC5

 Score = 89.7 bits (221), Expect = 6e-22
 Identities = 95/351 (27%), Positives = 146/351 (41%), Gaps = 52/351 (14%)

Query: 20  ALFAPQIQAEASVDDNRAQ--LPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATY 77
           AL AP   A A      +Q     G      Q +P     Q + V AD+LE  + QK T 
Sbjct: 46  ALLAPMGSARAQTQPAASQNATTGGNLLSARQLDPN----QKMLVTADQLE-YDYQKDTV 100

Query: 78  S--GNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSD--GEIKTHSTKATNH------ 127
           S  GNV +      + A  V L ++ N + AEGN +  D  G+I T  T           
Sbjct: 101 SAVGNVQIYYDGSTLEARRVVLDRKANTLRAEGNARLKDKDGKIVTADTLQLTQDFKQGF 160

Query: 128 ---LNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSC------PDGDNA 178
              L  D  T +NT +          AV   +T   +   ++G  T+C      P     
Sbjct: 161 IDSLRLD--TPDNTHFA---------AVRADRTDGNITVFQNGIYTACEPCKDDPSKPPL 209

Query: 179 WRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDT-RKTGFLYPTASYGSR 237
           W+++A  I  + +E++  + +  +E   +PV Y PY++ P     RKTGFL P     S+
Sbjct: 210 WQIKAKKIIHNDDEKMVYYEDAWVEFFGLPVAYFPYMSSPDPTVKRKTGFLMPEFFSSSQ 269

Query: 238 NGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLA----DD 293
            GY   VP +WN+AP  DL  T  ++ ++G  + + +R     G+  I++  +      D
Sbjct: 270 IGYGVSVPFFWNIAPDRDLTLTPAFLTQQGVLMQAEWRQRLINGSYTIRAAGIVQQNPQD 329

Query: 294 QLHTELG----------DRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSD 334
            + T  G          DR A +        + W F  D + VSD  +  D
Sbjct: 330 FITTSNGITEVLPGYREDRGAVESTGAFALNKFWTFGWDGTVVSDRTFLRD 380



 Score = 62.8 bits (151), Expect = 8e-14
 Identities = 74/287 (25%), Positives = 118/287 (41%), Gaps = 43/287 (14%)

Query: 496 TQTLEPKIQYLYVPEKYQDNIGLY---DSTLLQTDYYGLFRSRKYSGVDRIESANQVSYG 552
           TQT+EP+ Q +  P   + NIG +   D+  L  D   LF   KYSG DR+E  ++++ G
Sbjct: 586 TQTIEPRAQVIIRPN--ESNIGKFPNEDAQSLVFDDTNLFEINKYSGYDRVEGGSRLNLG 643

Query: 553 ASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSD----------KTSYSAWAVE 602
            +       Y   +N A      +    N   KN  +  D          +TS S +  +
Sbjct: 644 VT-------YTAAINGAGLFTAVVGQSYNLFGKNSYAYGDMANTGLESGLETSASDYIAK 696

Query: 603 MDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSI 662
             ++   YL +    ++D  + ++Q      E +  +   + N   +A  Y R      +
Sbjct: 697 FGYSPTKYLEFVTRFRFDEQNFSMQ----RFELQARAEIDRFN---IAVTYGRYEAQPLL 749

Query: 663 TNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFT 722
              D   R+GI      A Y+L+  W+  G   YD    E    L  L+Y  DC+ +   
Sbjct: 750 GYYDP--REGIYTN---ASYKLNDNWAVRGAIRYDFAAGEVDYTLVGLSYIDDCFTLALN 804

Query: 723 YSNQLKSWNGNFVTDPYATPIYENNFSF---NIGIIGFGTSIGAGSS 766
           Y +   + NG     P A P+ +  F      +G  GF TS G+ SS
Sbjct: 805 YISDY-TLNG-----PNAPPVTKVMFRIGLRTLGEGGFSTSFGSSSS 845