Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 936 a.a., LPS biosynthesis protein from Pseudomonas simiae WCS417

 Score =  288 bits (736), Expect = 1e-81
 Identities = 208/741 (28%), Positives = 331/741 (44%), Gaps = 80/741 (10%)

Query: 51  EPTNPGQQPINVEADKLEAING---------QKATYSGNVVVVQGKKRIAADNVTLHQQE 101
           EPT PG      ++D    I           Q AT +G+VV+ QG  ++ ++  +L+Q E
Sbjct: 137 EPTRPGMNDKTNKSDAPTFIGAKASRYEQEQQVATLAGDVVMRQGSMQLESEEASLYQAE 196

Query: 102 NVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAV 161
           N     G V+  D         A   L+T    ++N  Y       RG A+Y  +   A+
Sbjct: 197 NRGELNGKVRLRDNGALIVGDHAEVQLDTGAAQIDNAEYVLHKSRIRGNALYAKRAENAI 256

Query: 162 YEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGD 221
             ++DG+ T+C    NAW++R ++I ++      T  N  L ++N+P+ Y PY+  PI D
Sbjct: 257 IRLKDGTYTTCEPDSNAWQLRGNNITLNPATGFGTATNATLRIKNIPILYTPYIYFPIDD 316

Query: 222 TRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFG 281
            R++GFL P+ S GS  G++   P Y+NLAP YD      YM KRG  +   FRYLT   
Sbjct: 317 RRQSGFLPPSFSTGSETGFTLVTPYYFNLAPNYDATLYPQYMTKRGLLMEGEFRYLTKSS 376

Query: 282 AGQIKSEYLADD------QLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDL 335
            GQ    YL DD      Q   E   R+   ++H G        ++DY+++SD  YF DL
Sbjct: 377 EGQFGGAYLNDDNDERSKQTDYE-KTRYMLNWQHRGGLDSRLATQVDYTRISDPYYFQDL 435

Query: 336 DS---GVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYN 392
            S   GV +R+   L Q+G  TYR D++ + L V+ +QL    T S   PY  +PQ+++N
Sbjct: 436 KSFQEGVESRD--ALNQQGSVTYRGDSYQARLNVQAYQLA---TISQITPYDRLPQITFN 490

Query: 393 YYAPETMKYLDLDLVSHVSRFE--------TDARG--------------KPSATRVHIEP 430
              P     L+    +   RFE        TD  G              + + TR+++ P
Sbjct: 491 GALPYHPGGLNFTYETEAVRFERSLEKGTFTDQDGLVSPRLDTYVTGLTRANGTRLNVAP 550

Query: 431 GLKIPFSNTWGNWTTEARVLGTYYQQDLDKT------------------TDAKLEESVTR 472
            +  P + T+G  T + + + T Y  DLD                         + S  R
Sbjct: 551 AVDYPMNWTYGFITPKLKYVYTKYDLDLDSIGKNQIIAQQAAATAANPYAGGDFKSSQDR 610

Query: 473 VIPEIRSVAGIVLERDTVLL-DDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGL 531
            +P     +G+  +R+T     DY QTLEP+  YLYVP K Q +I ++D++     Y  L
Sbjct: 611 AVPVASVDSGLYFDRNTNWFGKDYRQTLEPRAFYLYVPNKDQSDIPVFDTSEYSFSYASL 670

Query: 532 FRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQ-IFYLDSKLN-PSNKNPDS 589
           FR  ++SG DRI   N++S G ++R+ + N  ER  ++ GQ +++ D ++  P     D 
Sbjct: 671 FRDNRFSGSDRIGDENKLSLGLTSRWIEENGFERQRVSVGQAVYFKDREVQLPGILAADR 730

Query: 590 TSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG---YIQANY 646
              ++  S  A++ +F F           +D +  + + G++ L Y+        I   Y
Sbjct: 731 ADAQSDVSPVALDYEFRFNRDWRATADYNWDTEEHSPRSGSAMLHYQPEDNPNKIINVGY 790

Query: 647 RYVAKDYIRNTVGDSITNIDDITRDG----------ISQAGILAGYQLSRKWSASGQYYY 696
           RY     + N +        D  + G          I Q      + +  +W+   ++ Y
Sbjct: 791 RYRNDQVVYNQLTGKWQFGGDYGQPGDPNFVKDYYKIQQHDFSMMWPIIPQWNLITRWQY 850

Query: 697 DLTTDEALEWLANLTYTSDCW 717
           D   +  LE      Y + CW
Sbjct: 851 DYARNRTLEAFGGFEYDNCCW 871