Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., LPS-assembly protein LptD @ Organic solvent tolerance protein precursor from Variovorax sp. SCN45

 Score =  182 bits (461), Expect = 8e-50
 Identities = 177/740 (23%), Positives = 298/740 (40%), Gaps = 52/740 (7%)

Query: 56  GQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDG 115
           G +P  V+ D++      +    G+  + +G   + AD +T     ++  A GNV  + G
Sbjct: 46  GMRPSLVDGDRISGRPDLEVVVEGDASLRRGDTHVTADRLTYQPPGDLATATGNVHLNQG 105

Query: 116 EIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDG 175
                  +    + + E    + RY  L     GEA  +      V      + T+C   
Sbjct: 106 GNVYEGPELHLKVESFEGFFNHVRYTLLETGAHGEAERIDFVDPNVSVARHATYTTCLRE 165

Query: 176 DNA-----WRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYP 230
           + A     W + A ++  D    +AT  + R+    +    LP ++ P+ + R++G L P
Sbjct: 166 NYAGWVPAWMLSAVTLTTDNETNLATATDARISFLGLTTPSLPSVSFPLNNARQSGLLPP 225

Query: 231 TASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYL 290
              + + NG+ +  P YWN+AP  DL      M  RG  L + FRYL    +GQI+ + +
Sbjct: 226 VIGFDTTNGFEYLQPYYWNIAPNRDLTLYPEIMSNRGVNLGTEFRYLEKDYSGQIRVDEM 285

Query: 291 ADDQLHTELGDRWAFQYEHN--------GIFQQAWKFEIDYSKVSDINYFSDLDSGVGNR 342
             D L     +RW    +H+        G+      F I  ++VSD +Y+ D  S     
Sbjct: 286 PSDSLRDR--NRWGLWAKHDQKLDPKPFGLDSLTTSFNI--NRVSDDDYWRDF-SHTPTL 340

Query: 343 EDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYL 402
              QL  E    +   +W        +Q L    +     Y  +PQ++ NY   +    L
Sbjct: 341 TSRQLTNEADLNWTKGDWSGQARTLSYQTLQYAASPITPSYNRVPQVTANYNKYD-WHGL 399

Query: 403 DLDLVSHVSRFETDARGKPSATRVHIEPGLKI----PFSNTW---GNWTTEARVLGTYYQ 455
           D+      +RF+ D+   P+   +    G ++      S  W   G +     +L T   
Sbjct: 400 DVSGTLDYTRFQVDSAYAPTLNGIKQPDGERVVGNLQISRPWVAPGGFFIPKLLLHTASY 459

Query: 456 QDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDD-YTQTLEPKIQYLYVPEKYQD 514
           Q      D +   S+T V+P +   +G+V ERDT L    + QTLEP+  Y++ P + Q 
Sbjct: 460 QLASPLADGR--TSITSVVPTVSLDSGLVFERDTSLFGSAWRQTLEPRAFYVHTPYRDQS 517

Query: 515 NIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDS-NYKERLNIAFGQI 573
            + +YD+      +  L+    +SG DR+   N ++ G +TR  D     E       Q 
Sbjct: 518 QLPVYDTAANDVSFATLYTENAFSGNDRVSDTNTLTTGVTTRLIDPVTGAESARFGIAQR 577

Query: 574 FYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTL 633
           F   S  N +     + +D++       ++ +N        G  QY++D+        TL
Sbjct: 578 FRF-SDQNVTLPGGTAVTDRSGDFILGGQVHWN--PKWSIDGLAQYNMDTGKSTRDALTL 634

Query: 634 EYRVASGY-IQANYRYVAKDYIRNTVGDSITNIDDITRDGISQ--AGILAGYQLS--RKW 688
            Y  A  + + A +RY A      T  D    +D   +  +S    G++ G   +   +W
Sbjct: 635 RYTPAQYHTLTAAFRYQADS--TTTANDGTKTVDFNWQWPLSDLTGGLMGGKSAADPGRW 692

Query: 689 SASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNF 748
            A G+  Y L      + L    Y + CW VG     +L +          ATP  +   
Sbjct: 693 YAVGRLSYSLHDRALSDSLVGAEYNACCW-VGRIVLERLVTGR--------ATP--DTRL 741

Query: 749 SFNIGIIGFGTSIGAGSSMT 768
            F I   GFG +IG+  + T
Sbjct: 742 MFQIQFNGFG-NIGSNPTST 760