Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 940 a.a., LPS-assembly protein LptD from Pseudomonas putida KT2440

 Score =  296 bits (759), Expect = 3e-84
 Identities = 219/747 (29%), Positives = 344/747 (46%), Gaps = 83/747 (11%)

Query: 51  EPTNPGQQPINVEADKLEAING---------QKATYSGNVVVVQGKKRIAADNVTLHQQE 101
           EPT PG      + +    IN          Q AT +G+VV+ QG  +  AD   L+Q E
Sbjct: 132 EPTRPGMADTTPKDESPTYINAKVSKYQQEQQIATLAGDVVMRQGSMQAEADEANLYQAE 191

Query: 102 NVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAV 161
           N    +GNV+  D        +A   L+T E  ++N  Y       RG A+Y  +   A+
Sbjct: 192 NRGELKGNVKIRDNGSLVVGDEAQIQLDTGEAQVDNAEYVMHKSHIRGSALYAKRGENAI 251

Query: 162 YEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGD 221
             ++DG+ T+C  G NAW+++ ++I ++      T  N  L V++ PVFY PY+  PI D
Sbjct: 252 IRLKDGTYTTCEPGSNAWQLKGNNITLNPATGFGTATNVTLRVKDFPVFYTPYIYFPIDD 311

Query: 222 TRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFG 281
            R++GFL P+ S  S  G+    P Y+NLAP YD      YM KRG  +   FRYLT   
Sbjct: 312 RRQSGFLPPSFSTSSDTGFMLVTPYYFNLAPNYDATLYPRYMAKRGLLMEGEFRYLTPSS 371

Query: 282 AGQIKSEYLADD----QLHTELGD-RWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLD 336
            GQ    YL D     +  T+  D RW   ++H G   +    E+DY+ +SD  YF DL+
Sbjct: 372 EGQFGGAYLNDKNDDRKDQTDYKDQRWMVNWQHKGGLDERLMTEVDYTDISDPFYFQDLE 431

Query: 337 SG-VGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYA 395
           S  +G      L Q+G  TYR D++ + L V  +++    T S   PY  +PQL+ N   
Sbjct: 432 SDQIGVESRDLLNQQGALTYRGDSYTARLNVHAYEMA---TISQITPYDRLPQLTLNGTL 488

Query: 396 PETMKYLDLDLVSHVSRFETDAR--------GKP-------------------------- 421
           P     L+L   +   RF+ D +        G P                          
Sbjct: 489 PFQPGGLNLGYETEAVRFDRDLKDSAVFDEDGNPDLTAGLKPDGIGGRRLDENIFGVARA 548

Query: 422 SATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDK------------TTD--AKLE 467
           + TR+++ P + +P   ++G  T + + + T+Y  DLD             T D     +
Sbjct: 549 NGTRLNVAPSISLPMEASYGYITPKLKYMYTHYDLDLDSKGKGDIAGANADTLDVFGDYK 608

Query: 468 ESVTRVIPEIRSVAGIVLERDTVLL-DDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQT 526
            ++ R IP     +G+  +R+T L   +Y QTLEP++ YLYVP K Q +I L+D+     
Sbjct: 609 SNLNRDIPIFSVDSGLYFDRNTSLFGTNYRQTLEPRMFYLYVPYKDQMDIPLFDTGETLF 668

Query: 527 DYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYL-DSKLNPSNK 585
            Y  LFR  ++SG DRI   N++S G +TR+ + N  ER N + GQ +Y  D K+     
Sbjct: 669 SYDSLFRDNRFSGTDRIGDENKLSLGVTTRWIEENGFERQNFSIGQAYYFKDRKVQLPGI 728

Query: 586 NPDSTSD-KTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG---Y 641
           +  +  D ++  S +A+  ++ F     ++    +D DS++ + G++   Y+        
Sbjct: 729 DYRTRKDAQSDVSPYALVYNYYFNRDWRFNSDFNWDPDSRSTRSGSAMFHYQPEDNPNKI 788

Query: 642 IQANYRY----VAKDYIRNT----VGDSITNID-DITRD--GISQAGILAGYQLSRKWSA 690
           +   YRY    +A D    T     GD  T  D +  +D   I Q      + +  +W+ 
Sbjct: 789 VNLGYRYRNDTIAYDSTTGTWKVGGGDYGTPGDPNYIKDYYKIQQHDFSVIWPIVPQWNV 848

Query: 691 SGQYYYDLTTDEALEWLANLTYTSDCW 717
             ++ +D   +  LE +    Y + CW
Sbjct: 849 IARWQHDYNRNRTLEAMGGFEYDNCCW 875