Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 938 a.a., LPS-assembly protein LptD from Magnetospirillum magneticum AMB-1

 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 145/720 (20%), Positives = 263/720 (36%), Gaps = 107/720 (14%)

Query: 53  TNPGQQPINVEADK-LEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQ 111
           T  G +P+++ AD+ +        T  G V ++   + I AD V+ + +++V+ A GNV 
Sbjct: 230 TEDGAEPVHMVADQVIYDREFNVVTAKGRVEMMHDGRTITADTVSYNMKQDVMGASGNVV 289

Query: 112 FSD--GEIKTHST------KATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYE 163
            ++  GE+ TH+          N +  D  T+     +   + G+      +   +AVY 
Sbjct: 290 LTEPSGEV-THADYFELTGDFKNGVARDIRTILADNSRLAAQSGQRVGGDRTDFDRAVY- 347

Query: 164 IEDGSITSC------PDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTV 217
                 T+C      P+    W+++A  +  +Q E    + +  LE++ +PV Y PYL+ 
Sbjct: 348 ------TACEPCRDDPERTPLWQVKAVRVTHNQAEAQVEYRDAWLELKGIPVAYTPYLSH 401

Query: 218 PIGD-TRKTGFLYPTASYGSRNGYSFEVPIY--------WNLAPQYDLETTFNYMQKRGT 268
           P     R++G L P     S  G S   P +        + L P++ L+    + +    
Sbjct: 402 PDPTIKRQSGLLAPIFGMNSSLGPSISTPYFQVVSDNEDFTLTPRFMLDQVSTFDKPDKD 461

Query: 269 QLNSVFRYLTDFGAGQ--------IKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFE 320
              SVF+ +   G  +        + +  +A D   T+ G R   + +      + W+  
Sbjct: 462 VPTSVFKRMQLAGQHRWRGVHGEAVTTASIASDT--TKEGIRGHIESKGLMELDRTWRAG 519

Query: 321 IDYSKVSDINYFSDLDSGVGNREDGQLI----------QEGRATYRSDNWDSALLVRDFQ 370
                 SD++Y S     V   ED   +          + G A   + ++    +V D  
Sbjct: 520 WQIQHQSDLSYRSLY--RVRTEEDRPWLMNRPYVEGFSRRGYAMMEAMSFQGKRVVED-- 575

Query: 371 LLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGKPSATRVHIEP 430
                 +   LP+ +   +S   +A       D D++++     T A+      R+  + 
Sbjct: 576 ---SSKSPVVLPHMVYSTVSSPGWAGSYWS-TDSDVLAYTRDVGTQAQ------RLSTKV 625

Query: 431 GLKIPFSNTWGNWTT-EARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDT 489
              +P  +  G        V G  Y  D   T  AK   S  R IPEI         R  
Sbjct: 626 AWNLPLISPDGQVVALSTSVRGDAYNAD-HLTGTAKSSGSAGRAIPEIALNWRYPFTRPG 684

Query: 490 VLLDDYTQTLEPKIQYLYVPEKYQDN-IGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQ 548
                 TQ +EP       P    D+ I   DS   + D   + R  +  G+D++E   +
Sbjct: 685 ---RSITQVIEPVAMVALSPNAGIDSRIPNEDSIGFELDETNIMRPNRLPGLDQVEGGAR 741

Query: 549 VSYGASTRFFDS-----------NYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYS 597
            +YG     + S            +++R   AFG            +   D+ SD     
Sbjct: 742 GAYGLRWAAYPSRGGAIVAQAAQGWRQRRTSAFG----------TGSGFTDTLSD----- 786

Query: 598 AWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNT 657
            +   +D      L     ++ D D+  V+   +            A+Y  ++     ++
Sbjct: 787 -YVGRVDVTPIGNLTLRDRVRLDKDTLEVRRNEAGFGIGPPLLAFSADYGMLSPSSTNSS 845

Query: 658 VGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTD-EALEWLANLTYTSDC 716
              +I         G+S         +S+ W +S     DL  +   + W AN  Y+ +C
Sbjct: 846 SSSTIYAKRQYVNYGLSST-------MSQNWRSSLSLQQDLAQNGGTVSWSANTMYSDEC 898



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 655 RNTVGDSITNID---DITRDGI----SQAGIL-------AGYQLSRKWSASGQYYYDLTT 700
           R   G+++T      D T++GI       G++       AG+Q+  +   S +  Y + T
Sbjct: 479 RGVHGEAVTTASIASDTTKEGIRGHIESKGLMELDRTWRAGWQIQHQSDLSYRSLYRVRT 538

Query: 701 DEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPI 743
           +E   WL N  Y       G+     +       V D   +P+
Sbjct: 539 EEDRPWLMNRPYVEGFSRRGYAMMEAMSFQGKRVVEDSSKSPV 581