Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., LPS assembly protein LptD from Erwinia amylovora T8

 Score =  493 bits (1269), Expect = e-143
 Identities = 287/795 (36%), Positives = 432/795 (54%), Gaps = 44/795 (5%)

Query: 11  TFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAI 70
           T LA  I +AL++ Q  A+         +P  ++ LV   E  +  Q P+ + ADK +  
Sbjct: 19  TLLATLIGSALYSQQGLADDLTLQCMLGVPGYDRPLV---EGKSTNQLPVTINADKAKGN 75

Query: 71  NGQKATYSGNVVVVQGKKRIAADNVTLHQ--------QENVVVAEGNVQFSDGEIKTHST 122
               A +SG+V + QG  R+ +D V LHQ        +   V A G+V++ D ++     
Sbjct: 76  YPDDAVFSGHVDIQQGNGRLQSDEVQLHQKILSGQSAETRTVDALGHVRYDDNQVILTGP 135

Query: 123 KATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEI-EDGSITSCPDGDNAWRM 181
           KA ++LNT +  +    YQ +   GRG A  +   G + Y I E+G+ TSC  G N+W +
Sbjct: 136 KAWSNLNTKDTNVWQGDYQMVDRQGRGVADQMKLRGDSRYTILENGTFTSCLPGQNSWSV 195

Query: 182 RASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYS 241
             S I  D++E++A  +N R ++  VPVFY PYL +P+G+ R++GFL P ASY   +G+ 
Sbjct: 196 EGSEIIHDRDEQLAEIWNARFKLGPVPVFYSPYLQMPVGNKRRSGFLIPNASYSKNSGFQ 255

Query: 242 FEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTE--- 298
           F +P YWN+APQ D   T +Y+ +RG Q  + FRYLT  G G +  +YL  D+++ +   
Sbjct: 256 FMLPYYWNIAPQADATLTPHYIGRRGMQWQNEFRYLTGAGPGLVGFDYLNSDRVYDDQHA 315

Query: 299 ---LGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATY 355
                 RW F ++H G++ Q W+F  DY+KVSD  YF+DLDS  G+  DG + Q+    Y
Sbjct: 316 DDKASSRWLFHWQHAGVYDQNWRFNADYTKVSDPWYFTDLDSPYGSTTDGYVTQKFSVGY 375

Query: 356 RSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFET 415
              NWD+ L  + FQ+ +  T S+N  YR  PQ  +NYY  +   + D  + +   +F  
Sbjct: 376 AEKNWDATLSTKQFQIFS--TNSSNDVYRAEPQFDFNYYQNDVGPF-DTHVYAQAVKFTN 432

Query: 416 DARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQ-DLD----KTTDAKLEESV 470
                P ATR+H+EP + +P SN WG+  TE ++L T+Y+Q ++D    + ++ +L+ SV
Sbjct: 433 VDSSMPDATRLHLEPRINLPLSNRWGSLNTETKLLATHYEQNNIDDYNLQNSNNQLKNSV 492

Query: 471 TRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYG 530
            RV+P+ +    +V +RD      YTQTLEP+ QYLYVP + Q +  +YDSTLLQ+DY G
Sbjct: 493 NRVMPQFKVDGKMVFDRDMNWSPGYTQTLEPRAQYLYVPYRDQSHTRVYDSTLLQSDYTG 552

Query: 531 LFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDST 590
           LFR R YSG+DRI SANQ++ G +TR FD++  ER N + GQI+       P+    +S 
Sbjct: 553 LFRDRSYSGLDRIASANQMTTGVTTRIFDNDLVERFNASVGQIY----SFTPARTGLNSV 608

Query: 591 SDKTSYS-AWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEY-RVASGYIQANYRY 648
            D    S  WA +  +  +D     GG+QYD     V  GN+ LE+ R A   +Q NYRY
Sbjct: 609 DDDDRGSLVWAGDSYWRISDRWAARGGLQYDTRLDNVSQGNTVLEWRRDADRMVQLNYRY 668

Query: 649 VAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA 708
            + +YIR T+ +       + + GISQ G  A + +   WS  G +YYD   ++  + L 
Sbjct: 669 TSAEYIRQTLPNYSNQA--LYQRGISQVGATASWPVVDAWSVVGAWYYDTKANQPADQLL 726

Query: 709 NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMT 768
            + Y+S C+ +   Y  ++  W  +       +  Y+N  SFNI + G     G G   T
Sbjct: 727 GVQYSSCCYALRLGYERKITGWEND-------SSKYDNKISFNIELRGLSPGYGLG---T 776

Query: 769 GVDSAGNSLGYGRPF 783
           G       L Y R F
Sbjct: 777 GQMLRQGILPYQRAF 791