Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., LPS-assembly protein LptD from Acinetobacter radioresistens SK82

 Score =  259 bits (661), Expect = 5e-73
 Identities = 215/765 (28%), Positives = 337/765 (44%), Gaps = 67/765 (8%)

Query: 4   PMSCFSRTFLAASISAALFAPQIQAEASVDDN--RAQLPNGEQ-----CLVNQPEPTNPG 56
           P S  S   L  SI+ A    Q   +  VD +   AQL N +      C      P +P 
Sbjct: 35  PFSTVSNNQLKESINEAYPGQQFFEQYYVDKSAPEAQLRNTQALSSAFCQGTWITPVSPD 94

Query: 57  QQPINVEADKLEAI--------NGQ-KATYSGNVVVVQGKKRIAADNVTLHQQENVVVAE 107
                 + DK+ ++        N Q  +T  GNVV+ Q  + I AD VTL Q +    A+
Sbjct: 95  NNA--PDPDKVTSVITADYGYYNPQGDSTLEGNVVIDQEGRSIRADKVTLDQTQTYANAQ 152

Query: 108 GNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDG 167
           G VQ + G +   S +   +L T    L N+ Y    +   G A  + +T   V  + + 
Sbjct: 153 GRVQLAQGGLLAQSDQINYNLKTQTGDLNNSFYIAEQQHAHGHAEKIERTSPTVAILSNA 212

Query: 168 SITSCPDGDN-AWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTG 226
           S T+CP G+  AWR++A  I+++Q          +L V+N PV  +PY   PI D R TG
Sbjct: 213 SYTTCPPGEAPAWRLQADRIELNQETGRGVTTGTKLYVKNTPVLAVPYFNFPIDDRRTTG 272

Query: 227 FLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTD-FGAGQI 285
            L P   + +  G    VP+Y NLAP YD   T  Y+  RG      FRYLT+ FG G++
Sbjct: 273 ILNPQFGFSNDGGLELSVPVYLNLAPNYDATITPRYLADRGPMAEGEFRYLTENFGEGRV 332

Query: 286 KSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDG 345
              YL  D+ + +  DR  F + H+ +    W   ++Y+ VSD +YF+DLDS   ++ D 
Sbjct: 333 WGGYLPSDKEYND-EDRKEFHFLHDWVINPYWSTNLEYNYVSDKDYFADLDSSPNSKTDL 391

Query: 346 QLIQEGRATYRSD--NWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYA--PETMKY 401
              +     YR+      + L V DFQ L KD    + PY  +PQ   NY    P+ ++Y
Sbjct: 392 NQRRAWVINYRNQIPGLKAQLKVEDFQTLDKDIKDEDRPYARLPQFLLNYVGGNPQGLQY 451

Query: 402 LDLDLVSHVSRFETDARG--KPSATRVHIEPGLKIPFSNTWGNWTTEA--RVLGTYYQQD 457
              +   +  +   D     + S TR++ +  ++  + N W     E   R + T+Y  D
Sbjct: 452 EFNNDTGYFKKSINDDSDVLESSGTRIYNQFAVRYNYRNPWSFVIPEVSFRSINTFY--D 509

Query: 458 LDKTTDAKLE-ESVTR--VIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQD 514
            D   D  +E +S+T+   +P+     G++ E++   L    Q++ P++ Y Y P K Q+
Sbjct: 510 RDSREDRGIEADSLTKSVAVPQFTLDTGLLFEKEGTFL----QSISPRLFYAYAPYKDQN 565

Query: 515 NIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQ-I 573
           +   +D+T     Y  LF   ++ G DR+E  N +S G +    D    ERL  + GQ  
Sbjct: 566 DYPNFDTTTASISYDQLFNPYRFYGHDRLEDNNFLSLGVTYSLMDQIGLERLRASVGQSY 625

Query: 574 FYLDSKLNPSNKNPDSTSDKTS-YSAWAVEMDFNF---ADYLFYHGGIQYDIDSQAVQLG 629
           F+ D ++   N++      +T    + + +++ NF   A+  +   G     D Q    G
Sbjct: 626 FFEDRRVTLYNEDELDQEKRTGPVLSLSSQLNQNFTISANSAWMSNGENSQRDFQVYYTG 685

Query: 630 NSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWS 689
           N    Y +  GY           + R  + +   + D +    I          +   W 
Sbjct: 686 NQGNLYNL--GY-----------FYRKDIPNRQDSYDQVVASFIQ--------PVYNNWR 724

Query: 690 ASGQYYYDLTTDEALEWLANLTYTSDCWYV---GFTYSNQLKSWN 731
             G   YD+  D A E+L  + Y S CW V   G +Y N L   N
Sbjct: 725 IMGHVQYDIDQDVAREYLLGVNYESCCWGVSVYGRSYYNDLDDIN 769