Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., ribosomal RNA small subunit methyltransferase A from Pseudomonas simiae WCS417

 Score =  273 bits (698), Expect = 3e-78
 Identities = 141/258 (54%), Positives = 176/258 (68%)

Query: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVI 65
           H  H+ARKRFGQNFL+D  +ID I+ +I+ KP   L+EIGPG GA+T+ +     +  V+
Sbjct: 4   HYQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVV 63

Query: 66  ELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHL 125
           ELD+DL   L           +H+GDA++FDF  L    N LRV GNLPYNISTPL+FHL
Sbjct: 64  ELDKDLIPILNQQFADKPNFNLHQGDALKFDFNTLNAAPNSLRVVGNLPYNISTPLIFHL 123

Query: 126 FEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPK 185
                 I+DMHFMLQKEVV RLAAGPG   +GRL++M QY+C+V  +  V P AF PPPK
Sbjct: 124 LNNAGIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPK 183

Query: 186 VDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPG 245
           VDSA+VRLVP+  LPHPA   + L+RVVRE FNQRRKT+RN  K L     +E  G++ G
Sbjct: 184 VDSAIVRLVPHAVLPHPAKDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAAGVDGG 243

Query: 246 MRPENLTLAQFVALANWL 263
           +RPE L LA FV LA+ L
Sbjct: 244 LRPEQLDLAAFVRLADQL 261