Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) from Variovorax sp. SCN45

 Score =  212 bits (540), Expect = 6e-60
 Identities = 114/222 (51%), Positives = 151/222 (68%), Gaps = 8/222 (3%)

Query: 7   LGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIE 66
           + H ARKRFGQ+FL+D  IID IV  I P+PG  +VEIGPGL A+T+P+   + + TVIE
Sbjct: 1   MAHIARKRFGQHFLSDGGIIDAIVREIAPQPGDAMVEIGPGLAALTQPLVERLGRLTVIE 60

Query: 67  LDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVK--PNNKLRVFGNLPYNISTPLMFH 124
           LDRDLA+RLR H    ++L + E D ++ DF  L +  P   LRV GNLPYNISTP++FH
Sbjct: 61  LDRDLAKRLREH----AQLEVIESDVLKVDFAALAERFPAKPLRVVGNLPYNISTPILFH 116

Query: 125 LFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPP 184
           L  +   + D HFMLQKEV++R+ A P T  Y RL+VM Q+  ++  VL VPP +F PPP
Sbjct: 117 LLGYAHLVADQHFMLQKEVIDRMVAKPATSDYSRLSVMLQWRYRMENVLFVPPESFDPPP 176

Query: 185 KVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRN 226
           +VDSAVVR+VP   +P P      L  +V+  F+QRRK +R+
Sbjct: 177 RVDSAVVRMVPLA-VP-PVVDAARLGEIVQVAFSQRRKLLRH 216