Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) from Sphingobium sp. HT1-2

 Score =  130 bits (327), Expect = 3e-35
 Identities = 95/264 (35%), Positives = 130/264 (49%), Gaps = 14/264 (5%)

Query: 8   GHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIEL 67
           G +A K  GQNFL D  ++D I +       Q   E+GPG G +T  + R   K   +E 
Sbjct: 20  GLQASKALGQNFLLDEQLLDRIAAIPGSIQDQPAFEVGPGPGGLTRAILRAGGKLVAVER 79

Query: 68  DRDLAERLRNHPELA--SKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFH- 124
           DR     L    ELA   +L +  GDAM  D     +  +   +  NLPYN+ T L+   
Sbjct: 80  DRRCLPALAEL-ELAFPGQLRVISGDAMEIDAH--AEAGDGAHIIANLPYNVGTALLVGW 136

Query: 125 ---LFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFV 181
              L+        +  M Q EV  R+ A PGT  YGRL V+AQ+       ++V  SAF 
Sbjct: 137 LSALWAPLPWWSSLTLMFQMEVAERIVAKPGTDHYGRLAVLAQWRSDARIAMKVHRSAFT 196

Query: 182 PPPKVDSAVVRLVPYEDLPHP-ATSLEWLDRVVREGFNQRRKTVRNCYKGL-AEPETLET 239
           PPPKV SAVV + P    P P    L+ L+R+    F QRRK +R   K +    + LE 
Sbjct: 197 PPPKVMSAVVHITP---KPAPEGVQLKILERLTAAAFGQRRKMLRQSLKSVPGALDALEV 253

Query: 240 LGINPGMRPENLTLAQFVALANWL 263
           +GI+P  R E +++ +FV LA  L
Sbjct: 254 IGIDPQRRAETVSVEEFVTLARQL 277