Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

 Score =  278 bits (712), Expect = 7e-80
 Identities = 144/255 (56%), Positives = 181/255 (70%)

Query: 9   HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELD 68
           H+ARKRFGQNFL+D  IID I+ AIN K G++L+EIGPG GA+TE +     +  V+ELD
Sbjct: 7   HRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELD 66

Query: 69  RDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEF 128
           +DL   L++     S   +H+GDA++FDF QL  P   L+V GNLPYNISTPL+FHL   
Sbjct: 67  KDLVPILQHKFADRSNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSH 126

Query: 129 HRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDS 188
              I+DMHFMLQKEVV R+AAGPG   +GRL++M QY+C+V  +  V P AF PPPKVDS
Sbjct: 127 AGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDS 186

Query: 189 AVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRP 248
           A+VRLVP+E LP PA     L+RVVRE FNQRRKT+RN  KGL +   +E  G++  +RP
Sbjct: 187 AIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAGVDGSLRP 246

Query: 249 ENLTLAQFVALANWL 263
           E L LA FV LA+ L
Sbjct: 247 EQLDLAAFVRLADQL 261