Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., Ribosomal RNA small subunit methyltransferase A from Alteromonas macleodii MIT1002

 Score =  327 bits (838), Expect = 2e-94
 Identities = 169/264 (64%), Positives = 198/264 (75%), Gaps = 4/264 (1%)

Query: 6   HLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVI 65
           HLGH ARKRFGQNFL+D Y+I  IV+AI PK  QNLVEIGPGLGA+T+PV  EVD  TVI
Sbjct: 5   HLGHTARKRFGQNFLHDDYVIGKIVAAIAPKNEQNLVEIGPGLGALTDPVCEEVDALTVI 64

Query: 66  ELDRDLAERLRNHPELASKLTIHEGDAMRFDF----KQLVKPNNKLRVFGNLPYNISTPL 121
           ELDRDLA+RLR+HP   +KLT+ E DAM  DF    K++   + KLRVFGNLPYNISTPL
Sbjct: 65  ELDRDLAKRLRHHPFNGNKLTVIEQDAMTMDFGALSKEMPVKDKKLRVFGNLPYNISTPL 124

Query: 122 MFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFV 181
           MFHLF+    I+DMHFMLQKEVVNRLAAGPG+K YGRL+VMAQYYC V+PVL VPP AF 
Sbjct: 125 MFHLFDHAHCIEDMHFMLQKEVVNRLAAGPGSKNYGRLSVMAQYYCHVIPVLNVPPGAFK 184

Query: 182 PPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLG 241
           PPPKVDSAVV+LVP++  P    S+  L+RV  + FNQRRKT+RN  K     E +  LG
Sbjct: 185 PPPKVDSAVVKLVPHQAPPVDVESVNTLERVCAQAFNQRRKTIRNSLKDSLSEEEIRELG 244

Query: 242 INPGMRPENLTLAQFVALANWLDA 265
           I+P  R E L+L  F  +AN + A
Sbjct: 245 IDPTSRAEVLSLNDFATIANAVSA 268