Pairwise Alignments

Query, 271 a.a., ribosomal RNA small subunit methyltransferase A from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., rRNA-adenine N6,N6-dimethyltransferase from Agrobacterium fabrum C58

 Score =  153 bits (386), Expect = 4e-42
 Identities = 102/265 (38%), Positives = 138/265 (52%), Gaps = 15/265 (5%)

Query: 8   GHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIEL 67
           G  A+K  GQNFL D  +   I     P  G  ++E+GPG G +T  +   +    VI +
Sbjct: 18  GLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAI-LSLGAKKVIAV 76

Query: 68  DRD------LAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPL 121
           +RD      LAE   ++P    +L + EGDA++ DF+ LV     +R+  NLPYN+ T L
Sbjct: 77  ERDSRCLPVLAEIEAHYP---GRLEVIEGDALKTDFEALVPAGEPVRIIANLPYNVGTQL 133

Query: 122 MFHLF---EFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPS 178
           + +     E+      M  M QKEV  R+ A  G   YGRL V+A +        +VPP 
Sbjct: 134 LVNWLLPREWPPFWLSMTLMFQKEVGQRIVAEEGDNHYGRLGVLAGWRTVSEMAFDVPPQ 193

Query: 179 AFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLE 238
           AF PPPKV S VV L+P +D P P   +  L+RV    F QRRK +R   K L     LE
Sbjct: 194 AFSPPPKVTSTVVHLLP-KDKPLPC-DVAKLERVTEAAFGQRRKMLRQSVKSLGGETLLE 251

Query: 239 TLGINPGMRPENLTLAQFVALANWL 263
             GI+P  R E L++ +FV LAN L
Sbjct: 252 KAGIDPTRRAETLSVEEFVTLANCL 276