Pairwise Alignments

Query, 328 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., periplasmic binding subunit of unknown solute from Pseudomonas putida KT2440

 Score =  145 bits (365), Expect = 2e-39
 Identities = 86/308 (27%), Positives = 147/308 (47%), Gaps = 11/308 (3%)

Query: 23  IGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNI---RCSVESTGGSIYNV 79
           + +   +A  FI I TG  +GVYYP G  I ++ +     H I   + +V++T  S+ N+
Sbjct: 16  VSAAAQAAPTFINILTGGTSGVYYPVGVGISQIYS-----HGIEGSKTTVQATKASVENL 70

Query: 80  NTIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIARADSGIEN 139
           N +++G  +      D     + G +E   + P KKLRA+   +     I+A  +SGI +
Sbjct: 71  NLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQIVASKESGITS 130

Query: 140 VKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDSFKLAAELKGSERSQALCDNKIDAFI 199
           + DL GKR+++G P SG     + +  A G           L  +E  + + + ++DA +
Sbjct: 131 LSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESVELIKNRQLDATL 190

Query: 200 YMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAYSVVPAGMYSGTDQEVKSFG 259
              G    AI++   +     VP     + +I   N  Y  + +PA  Y G   +V +  
Sbjct: 191 QSSGLGQAAIRDLAATLPVVFVPIPAEVVTRI--GNNAYQPATIPANTYDGQSADVSTAA 248

Query: 260 VAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIPLHPGAVK 319
           +   LVT  ++ + + Y +TK +FEN       H A  +++ E+       IPLHPGA +
Sbjct: 249 INNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAEN-AAKNLPIPLHPGAAR 307

Query: 320 YYKEAGLI 327
           Y+KE  L+
Sbjct: 308 YFKEKNLL 315