Pairwise Alignments

Query, 328 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score =  146 bits (369), Expect = 6e-40
 Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 10/317 (3%)

Query: 13  IKMGAIAAAVIGSGVASAQDFITIGTGSVTGVYYPTGGAICKLVNKDRKDHNIRCSVEST 72
           I +   AA ++ S   +A  +I I TG  +GVYYP G  + ++ +   KD   + SV++T
Sbjct: 8   ISLATAAALMVASTAYAAPVYINILTGGTSGVYYPIGVGLSQIYSSGIKDS--KTSVQAT 65

Query: 73  GGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSEFAEQGPYKKLRAVFSMHTEPFNIIAR 132
             S+ N+N +++G  +      D      NG  +   + P  KLRA+   +     I+A 
Sbjct: 66  KASVENLNLLQAGRGELAFALGDSVADASNGVEDAGFKAPLTKLRAIAGAYPNYIQIVAS 125

Query: 133 ADSGIENVKDLAGKRVNIGNPGSGDRATMQVVMDAFGWNNDSFKLAAELKGSERSQALCD 192
            +SGI+ + DL GK V++G   SG     + +  A G   D  K+   L  +E    + +
Sbjct: 126 QESGIKTLADLKGKTVSVGAAKSGTELNARAIFKAAGLTYDDMKV-QYLPFAESVDLIKN 184

Query: 193 NKIDAFIYMVGHPNGAIKEATTSCAAKLVPATGPEIEKIVANNPYYAYSVVPAGMYSGTD 252
            ++DA +   G    AI++  ++ A   V      I KI   NP Y  + +PA  Y G  
Sbjct: 185 RQLDATLQSSGLGMAAIRDLASTMALNYVSIPADVIGKI--GNPAYQSAQIPANTYDGQA 242

Query: 253 QEVKSFGVAATLVTTEEVSEAVVYNLTKAVFENFDTFTRLHPAFANLKKEDMVTAGNSIP 312
             V +  +   LVT E+V + V Y +T+ +F+N +     H A  ++  E+   A  ++P
Sbjct: 243 DAVPTVAITNILVTREDVPDEVAYQMTRLLFDNLNRLGTSHSAAKDISLEN---AAKNLP 299

Query: 313 --LHPGAVKYYKEAGLI 327
             LHPGA +YYKE G +
Sbjct: 300 IALHPGAERYYKEVGAL 316