Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score = 69.3 bits (168), Expect = 5e-16
 Identities = 98/465 (21%), Positives = 189/465 (40%), Gaps = 68/465 (14%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G ++  AG        A +++G MRGG  +  ++ S +   +SG++IA+    GT 
Sbjct: 60  FILAGNLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLGTI 119

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            I  MK  G+    A  V  A++T G + PP +    + M+  V I    +    ++P +
Sbjct: 120 EIKAMKDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIG--ALFLGGVVPGV 177

Query: 328 ISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKE 387
           +  + ++  V   A + G         +   ++LLS +  ++ +    A VY  I   + 
Sbjct: 178 VMTLLMMGTVAYFAHRNGWGS----DAAFNWRQLLSASIEVVIVLAFPAAVYVMI---EV 230

Query: 388 AFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIV 447
                   ++ + +L A       SA  A                          L+  V
Sbjct: 231 GLSTNQAVLIALAVLIALDWYFDFSAVMA--------------------------LMTPV 264

Query: 448 VLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLV 507
           +L+  +T+  F+P  +A  A ++ +F+ L +   M L     +  D  +   + L   +V
Sbjct: 265 ILIGGMTLGWFTPTEAAVAAVIWSLFLGLVRYRSMTLKTLAKATFDTIETTASVLF--IV 322

Query: 508 SGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGM 567
           + A     +  A+ AA  +   +    +G     +V F++  NL++         L +G 
Sbjct: 323 TAASIFAWLLTASQAAQMLSDAI----LGFTQNKWV-FLALANLLI---------LFVGC 368

Query: 568 GLPTTANYIVVSTLMAPVIVTLGAE---HGLIIPLIAVHLFVFYFGILADDTPPVGLAAF 624
            + T A   ++  ++ P+++ LG +    GLI+ L  +       G+L    PP+G+  F
Sbjct: 369 FIDTIAAITILVPILLPIVLKLGIDPIHFGLIMTLNLM------IGLL---HPPLGMVLF 419

Query: 625 AAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSW 669
             A +A+    RT +      I   ++P M        + G+  W
Sbjct: 420 VLARVARLSVERTTMA-----ILPWLVPLMIALLAITYIPGLTLW 459