Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+  G ++ R G     I +A S++GH+RGG  +  VVAS L G +SGS++A+    G  
Sbjct: 61  FIFAGDLMMRGGIADRLIGMAASLVGHLRGGLGQVNVVASTLFGGISGSAVADASAIGGI 120

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP M R G+    A  V V ++    + PP      + +     IS  ++  A I+P L
Sbjct: 121 MIPQMARHGYAKDYAVNVTVNSAIIALMIPPSHNMIIYSLSAGGTISIADLFTAGIMPGL 180

Query: 328 ISYIALIYIVHLEACKAGMSG--LPRRHQSTVAQKLLSFTATILGLCVISAVVYYGI 382
           +   A++   ++ A   G      P  H       L S  A I G+ +I  +++ G+
Sbjct: 181 LLAAAMMITAYVVARNRGYPAGTFPGWH-----AVLRSVVAAIPGIMLI-GIIFGGV 231



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 501 DLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAV 560
           D +E+ +   R    + +    A +   ++    +     + ++ IS    +++L+   +
Sbjct: 264 DFVEATLGAVRTTAMVLLVIGTAASFGWLMAFLQVPKATIEMMQAISSNPYVILLLIN-I 322

Query: 561 ISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVG 620
           I LILG  +      I+ + +  P++   G     I P+    + +   GI   +TPPVG
Sbjct: 323 ILLILGTFMDMAPMIIICTPIFLPLVKAFG-----IDPVHFGVILILNAGI-GLNTPPVG 376

Query: 621 LAAFAAAAIAK 631
              F   A+ K
Sbjct: 377 SVLFVGCAVGK 387



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 261 VVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIK 320
           ++ T  F +PL+K  G      G + +  +  G  TPP+ G+  F+      I+  E +K
Sbjct: 338 IICTPIF-LPLVKAFGIDPVHFGVILILNAGIGLNTPPV-GSVLFVGCAVGKITIGEAMK 395

Query: 321 AAILPALISYIALIYIV 337
             I P   + IA++ IV
Sbjct: 396 -TIWPFFGASIAVLMIV 411