Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

 Score = 77.0 bits (188), Expect = 2e-18
 Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 25/256 (9%)

Query: 152 MMVAALFLL-YTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGV---STSFVFL 207
           M V  LFLL + F    +P  I+     L+ A+S L  + + V  +A+ +   S ++ FL
Sbjct: 1   MAVLCLFLLLFVFMFLGVPIAIS---LGLSGAVSILMFSQDSVSSLAIKLFETSDAYTFL 57

Query: 208 ----FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVT 263
               F+L GA +   G     I  A + +GH+RGG A AAV+A  L   +SGSS A V  
Sbjct: 58  AIPFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAA 117

Query: 264 TGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIK--- 320
            G+  +  M R G+P      +   A T G L PP     + +MV Y   +   V K   
Sbjct: 118 VGSIAVAGMVRSGYPKAFGAGIICNAGTLGILIPP-----SIVMVVYSAATETSVGKLFM 172

Query: 321 AAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAV--- 377
           A ++P L+  + L+  +++    A +  LP + ++T  + L S      GL ++  +   
Sbjct: 173 AGVIPGLLLGLMLMIAIYI---VARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILGG 229

Query: 378 VYYGIGWTKEAFGDAA 393
           +Y G+    EA   AA
Sbjct: 230 IYSGMFTPTEAAAVAA 245



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 29/177 (16%)

Query: 443 LLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDL 502
           LL +V+++  +    F+P  +A  A+V+  F+ L     M L                D 
Sbjct: 220 LLLLVIILGGIYSGMFTPTEAAAVAAVYSAFVALFIYKDMQL---------------RDC 264

Query: 503 LESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVIS 562
            + L+   R  I +    A A     V+T   I   +T +V    G   +  LI   V+ 
Sbjct: 265 PKVLLESGRLAIMLMFIIANAMLFAHVLTTEQIPQEITAWV-LSEGLTPIGFLIMVNVVL 323

Query: 563 LILGMGLPTTANYIVVSTLMAPVIVTLGA-------------EHGLIIPLIAVHLFV 606
           LI G  +  +A  ++++ +  P+ + LG              E GL+ P + ++LFV
Sbjct: 324 LIAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVGLNLFV 380