Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 2/187 (1%)

Query: 151 LMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVL 210
           ++MVA + L +  +      +       +    +++ ++ + +F        + +  F+L
Sbjct: 3   VVMVATMVLCFALSISVAVSIGLASILGIQVTNANMLISVKEMFNSINKFPLAAIPFFIL 62

Query: 211 FGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIP 270
            G ++E  G     ++ A S++G ++GG     V+   +   VSGSS+A     G   IP
Sbjct: 63  AGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAILIP 122

Query: 271 LMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISY 330
            + + G+P + A A++  ++  G + PP +    + +   V I   E+  A   P ++  
Sbjct: 123 ALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSIG--ELFIAGFGPGILIS 180

Query: 331 IALIYIV 337
           +AL+  V
Sbjct: 181 LALMLFV 187



 Score = 42.4 bits (98), Expect = 6e-08
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)

Query: 502 LLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVI 561
           L +S++S A  M  I    A AG    ++T  G+   +  +++ +     M +L   A +
Sbjct: 266 LRKSVMSSAVIMFII----ANAGLFAFLITRAGVPDAIGHWLQQVLQSPAMFLLGVNAAL 321

Query: 562 SLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGL 621
             ++GM + T+A  IV++ ++APV V  G +      ++ V+L       L   TPP G+
Sbjct: 322 -FVIGMFIETSAAIIVLAPILAPVAVHFGIDPVHFGLIMVVNL------ALGMITPPFGV 374

Query: 622 AAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLML 674
             FAA  +A+    R         I   ++PF+ V    L+++    W  L L
Sbjct: 375 NLFAACTVARISLDR---------IVRHLVPFVLVIMACLMVITYVPWVSLAL 418