Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 73.6 bits (179), Expect = 2e-17
 Identities = 79/279 (28%), Positives = 122/279 (43%), Gaps = 32/279 (11%)

Query: 151 LMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFL--- 207
           L +++  F+L+   G  MP   A  G S     ++  L  E    + +     F FL   
Sbjct: 3   LTVLSLSFVLFLLLG--MPVAFAI-GLSCLATFAYEGLPFETAIQMMVSGMNVFSFLAIP 59

Query: 208 -FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGT 266
            F+  G ++   G     +  A S++GH +GG   A VVAS L G VSGS +A+    G 
Sbjct: 60  FFIFSGELMLHGGIADKIVAFARSLVGHWKGGLGLANVVASTLFGGVSGSPVADTSAMGG 119

Query: 267 FTIPLMKRVGFPGTKAGAVEVAASTNGQLTPP-----IMGAAAFLMVEYV------GISY 315
             IP+MKR G+    A  V   AS +G L P      I   AA   V  +      G+S 
Sbjct: 120 VMIPIMKREGYSAAYAVNVTTHASLSGALMPTSHNMIIYAFAAQAAVGTIDGHIIKGVSI 179

Query: 316 VEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQ-STVAQKL-------LSFTAT 367
            +++ A ++P     + ++   + +A K    G P+R   ST+ ++         +F A 
Sbjct: 180 GDLMFAGLIPVFWIMVCMLVAAYWQAAK---HGYPKRTDGSTMLERFPGWGMVGKTFLAA 236

Query: 368 ILGLCVISAV---VYYGIGWTKEAFGDAATPILTVVLLA 403
           I GL VI  +   V  G+    EA   A T  L + ++A
Sbjct: 237 IPGLMVIVIILVCVMQGVATATEAAAIAVTYSLLLTVVA 275