Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., TRAP transporter large permease from Variovorax sp. OAS795

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 8/220 (3%)

Query: 193 VFGVALGVSTSFVFL----FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASG 248
           VF   +G    F FL    FV  G ++   G     ++ A S++GH+RGG   + V+   
Sbjct: 42  VFQKMVGGMQIFSFLAIPFFVFAGELMLYGGIAQRIVRFANSLVGHVRGGLGMSNVIGCT 101

Query: 249 LSGLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMV 308
           L G V+GS +A+V   G+  IPLMK+ G+    A  V   A+  G L P       F + 
Sbjct: 102 LFGGVAGSPVADVSAMGSVMIPLMKKEGYDADYAVNVTTHAALVGALMPTSHNLIIFTLA 161

Query: 309 E--YVGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTA 366
                 +S + +I A ++PALI  +  +   +  A + G     R       + L +F  
Sbjct: 162 TTGIASVSVLSLILAGLIPALILTLCNLGAAYYVAIRRGYP--IRGAFPGWGEVLAAFIG 219

Query: 367 TILGLCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYV 406
            + GL +++ ++   +     A   AAT +L  + +  +V
Sbjct: 220 ALPGLMIVAIILVGILSGVFTATESAATAVLWALGVTVFV 259



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 49/225 (21%), Positives = 78/225 (34%), Gaps = 52/225 (23%)

Query: 443 LLPIVVLVWC-------LTVERFSPGLSAF--WASVFMIFILLTQRPLMALFNRTGSLGD 493
           L+P ++L  C       + + R  P   AF  W  V   FI      ++      G L  
Sbjct: 178 LIPALILTLCNLGAAYYVAIRRGYPIRGAFPGWGEVLAAFIGALPGLMIVAIILVGILS- 236

Query: 494 AAKEGVTDLLESLVSGARNMIGIGV-------------ATAAAGTVVGVVTL-----TGI 535
               GV    ES  +     +G+ V             A A A    GVV L     +  
Sbjct: 237 ----GVFTATESAATAVLWALGVTVFVYRSLSRKDFFKACAKACKTTGVVLLLIGISSAF 292

Query: 536 GLVMTDFVEFISGGNLM--------LMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIV 587
           G  M  +      G LM        ++ +   V+  +LG  L   A  ++ + +  P+ +
Sbjct: 293 GYFMALYEVPQKTGELMTSVSSDPWVIFLMINVLLFVLGTFLDMAATILICTPIFLPIAM 352

Query: 588 TLG---AEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAI 629
             G    + G+++ +            L  +TPPVG   F   AI
Sbjct: 353 QFGMSPVQFGIVMLINCA---------LGLNTPPVGTTQFIGCAI 388