Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score = 72.4 bits (176), Expect = 5e-17
 Identities = 39/121 (32%), Positives = 64/121 (52%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           FVL GA++   G     +  A  ++G +RGG +   ++AS   G +SGSS+A+  + G+ 
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV 120

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP M+R G+P   + AV V+ S    LTPP   +  + +     +S   +  A I+P L
Sbjct: 121 LIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGL 180

Query: 328 I 328
           +
Sbjct: 181 L 181



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 529 VVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVT 588
           V+TL  I   +T     +S    ++++    ++ ++LG  +      ++++ ++ PVI  
Sbjct: 292 VMTLMQIPSKITTAFLTLSDNRYVILMCINFML-MLLGTVMDMAPLILILTPILLPVITG 350

Query: 589 LGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAK 631
           +G +      ++ V+L +   G++   TPPVG   F  +AI K
Sbjct: 351 IGVDPVHFGMIMLVNLGI---GLI---TPPVGAVLFVGSAIGK 387