Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter large permease from Pseudomonas segetis P6

 Score = 68.9 bits (167), Expect = 6e-16
 Identities = 39/121 (32%), Positives = 62/121 (51%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           FVL GA++   G     +  A  ++G +RGG +   +VAS   G +SGSS+A+  + G+ 
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFASVLVGFVRGGLSLVNIVASAFFGAISGSSVADTASVGSV 120

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP M R G+P   + AV V+ S    LTPP   +  + +     +S   +  A I P +
Sbjct: 121 LIPEMARKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSISALFIAGIGPGI 180

Query: 328 I 328
           +
Sbjct: 181 L 181



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 511 RNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLP 570
           R +  + +  A A +   ++TL  I   +T     +S    ++++   A++ L+LG  + 
Sbjct: 274 RTLSIVMILIAFAASFGYIMTLMQIPAKITTAFLTLSDNRYVILMCINAML-LVLGTLMD 332

Query: 571 TTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIA 630
                ++++ ++ PVI  LG +      ++ V+L +   G++   TPPVG   F  AA+ 
Sbjct: 333 MAPLILILTPILMPVITGLGIDPVHFGMIMLVNLGI---GLI---TPPVGAVLFVGAAVG 386

Query: 631 K 631
           K
Sbjct: 387 K 387