Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 2/181 (1%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G ++   G     +  A + +GH+RGG    A+VA+ +   +SGS+ A+     T 
Sbjct: 62  FMLAGELMNAGGISKRIVNFALAFVGHIRGGLGIVAIVAAVIMAAISGSAAADAAALATM 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPAL 327
            IP+M++ G+   ++  +  A      + PP +G   F +V  V I   ++  AAI+P L
Sbjct: 122 LIPMMRQAGYNIPRSAGLISAGGVIAPVLPPSIGMIIFGVVANVSIG--KLFMAAIVPGL 179

Query: 328 ISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKE 387
           +  ++L+    + A K  ++ LPR      A+  ++ T  ++    I   + +G+    E
Sbjct: 180 LMGVSLLVAWMIVARKDQVAVLPRMPMRERAKVAVNSTWALIMPVGIVGGMKFGVFTPTE 239

Query: 388 A 388
           A
Sbjct: 240 A 240



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 269 IPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALI 328
           +PL++  G      G + +  +  G +TPP+ G    ++     +S  E++K  I+P L+
Sbjct: 344 MPLVREAGIDPVYFGVLFIMNNAIGLITPPV-GIVLNVVCGTAKLSMSELMK-GIMPFLL 401

Query: 329 SYIALIYIVHL 339
           + IA+++++ L
Sbjct: 402 AEIAVLFLLVL 412