Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., TRAP-type uncharacterized transport system, fused permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  839 bits (2167), Expect = 0.0
 Identities = 420/843 (49%), Positives = 577/843 (68%), Gaps = 5/843 (0%)

Query: 11  VQEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHL 70
           +Q++VA +DTG R P G+   V++ V L W+LFQ WYASPLPF    G+LNDT+AR+IHL
Sbjct: 12  LQQLVADSDTGGRKPTGVTAGVVFSVCLLWALFQYWYASPLPFELGIGILNDTEARAIHL 71

Query: 71  TFAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVI 130
            FA+FLAF A+PA K SPR R+P+ DWLLA   +F  AYI LFYA+LA R G P   D+ 
Sbjct: 72  AFALFLAFLAWPAFKRSPRHRVPVIDWLLAGVAAFCGAYIMLFYADLATRPGQPNGLDIA 131

Query: 131 ASVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTT 190
               G+VLLLEATRRA+G P+  +A +FL Y   GP++P+V++HKGAS+N+ +SH+WLTT
Sbjct: 132 VGFAGVVLLLEATRRAVGWPMAALAVVFLAYCLLGPHLPEVLSHKGASVNRLISHMWLTT 191

Query: 191 EGVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLS 250
           EGV+G+ALGVS   +F++VLFGA+L+RAG G Y ++V+F+ LGH+RGGPAK AVV+S L+
Sbjct: 192 EGVYGIALGVSAGTIFVYVLFGALLDRAGGGNYMMQVSFAALGHLRGGPAKVAVVSSALN 251

Query: 251 GLVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEY 310
           G++SGSS++NVV+ G FTIPLMK+ G+ G KAGA+E  +S NGQ+ PP+MGAAAFLMVEY
Sbjct: 252 GMISGSSVSNVVSGGIFTIPLMKKAGYGGVKAGAIETMSSVNGQIMPPVMGAAAFLMVEY 311

Query: 311 VGISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILG 370
           VGI Y +++K A LPA +SYI L+YIVHLEA K GM  + +        +LL     I G
Sbjct: 312 VGIPYADIVKHAFLPATLSYIGLLYIVHLEALKLGMQPIVQAVARPWRVRLLRNAIGIAG 371

Query: 371 LCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISA--PYAKEGLGIDENLQY 428
              +   VYY +   K   G  A    + V+L  Y+  V  +A  P   + + ID     
Sbjct: 372 SIAVVCSVYYLLQGIKAVMGPVAPYAASAVVLGLYLFSVYQAAGCPDLPDDIDIDHPRPL 431

Query: 429 VPDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRT 488
                PT+++GLHYL+PI VL+WCL VE  SP LSAFWA   +I ++LTQRPL+ALF RT
Sbjct: 432 --QTWPTVRAGLHYLMPIAVLIWCLMVEEMSPALSAFWAVTVLIVLMLTQRPLIALFRRT 489

Query: 489 GSLGDAAKEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISG 548
              G    +G   +++    G+RNMIGIGVATA AG +VG +TLTG+GL MT+FVEF++ 
Sbjct: 490 SGAG-TWLQGWRSVVDGFNDGSRNMIGIGVATATAGIIVGAITLTGLGLRMTEFVEFVAQ 548

Query: 549 GNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFY 608
           GN+M+ML+F A + L+LG+G+PTTANY++V+TLMAPV+V LGA+ GLIIPL+AVHLFVFY
Sbjct: 549 GNVMMMLLFIAFVCLVLGLGVPTTANYVLVATLMAPVVVELGAQSGLIIPLVAVHLFVFY 608

Query: 609 FGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDS 668
           +GI+ D TPPVGLA FAAAAI+  D I+TG+QG  Y +RT ILPF+++FN QLLL+ + S
Sbjct: 609 YGIMGDITPPVGLATFAAAAISGEDAIQTGVQGAIYALRTVILPFIWIFNPQLLLINVHS 668

Query: 669 WWHLMLTILSSITAMLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVYPAQV 728
              L+  +L+   A LLF+AAT  W+  K++WWE V LL+     FRP F+ D + P   
Sbjct: 669 TPELIRLLLACTLATLLFAAATMNWFRVKSRWWETVLLLLAVLLLFRPDFFMDRLAPEYR 728

Query: 729 MYAGTKLEQIVEQAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASMGLTL 788
               +++ ++    P    + MI+ G  ++G+   KTV L   ++    ++R++  GL L
Sbjct: 729 EVPASQVYEVARDTPADDRVVMIIQGTTIEGDDVVKTVALQLGEKGEDGRKRLSEAGLQL 788

Query: 789 LNDKNRMLVEMVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLAWNQK 848
           +     + +  V+FG+ A  +G +  W++  V V S R    W +LPA+LL  L+ W+Q 
Sbjct: 789 VPLGAAVQIGQVKFGTRAAKSGFEQGWDVTGVQVPSGRATPHWFYLPALLLVALVWWSQG 848

Query: 849 RRI 851
           RR+
Sbjct: 849 RRM 851