Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 66.6 bits (161), Expect = 3e-15
 Identities = 88/389 (22%), Positives = 155/389 (39%), Gaps = 45/389 (11%)

Query: 198 LGVSTSFVFL----FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLV 253
           +G + SF  L    F+L G ++   G     + +A +++GH+RGG     ++A  L   +
Sbjct: 48  IGGADSFPLLAVPFFMLAGEIMNVGGLSRRIVNLALTVVGHVRGGLGYVTIMAGCLLSAL 107

Query: 254 SGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGI 313
           SGS++A+        +P+M + G    +AG +  A    G + PP +G   F +   V I
Sbjct: 108 SGSAVADAAALTALLLPMMTKAGHDRARAGGLIAATGVIGPVIPPSIGLVIFGVAANVSI 167

Query: 314 SYVEVIKAAILPALI----SYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATIL 369
           S  ++  AAI+P L+     ++   ++V  E  +      PR+      +++L      +
Sbjct: 168 S--KLFMAAIVPGLLIGGALWVTWAWLVRRETIQPP----PRKS----GKEILKAARDAV 217

Query: 370 GLCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYV 429
              V+  ++  G+           TP    V+ A Y   V   A      L   +  +  
Sbjct: 218 WALVLPIIILVGLRM------GIFTPTEAAVVAAVYALFV---ATVVYRELSFKQLHEVF 268

Query: 430 PDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTG 489
              A T    +  +   +V  W +TV    P         FM   +L    +M L    G
Sbjct: 269 VVAAKTSAIVMFLIAAAMVSAWLITVADL-PSKVVDMLQPFMGNPILLMAAIMLLVMVVG 327

Query: 490 SLGDAAKE--GVTDLLESLVS---------GARNMI--GIGVATAAAGTVVGVVTLTGIG 536
           +  D       +T +L  +V          G   +I   IG+ T   GTV+ VV   G+G
Sbjct: 328 TAMDMTPTILILTPVLMPVVKAAGIDPVYFGVMFIINNSIGLVTPPVGTVLNVV--AGVG 385

Query: 537 LVMTDFVEFISGGNLMLMLIFTAVISLIL 565
            +  D  E + G    ++  F  +  ++L
Sbjct: 386 RMKMD--EVMRGVMPFMVAEFAVMFLMVL 412



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 58  GVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAEL 117
           G+   T+A  +   +A+F+A   Y  +       +        +A   SA  ++L  A +
Sbjct: 233 GIFTPTEAAVVAAVYALFVATVVYRELSFKQLHEV------FVVAAKTSAIVMFLIAAAM 286

Query: 118 AGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYM 168
              +   T  D+ + VV M+      +  +G P++++AA+ LL    G  M
Sbjct: 287 VS-AWLITVADLPSKVVDML------QPFMGNPILLMAAIMLLVMVVGTAM 330