Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 66.2 bits (160), Expect = 4e-15
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 207 LFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGT 266
           LFVL G+    AG      ++A++++GH RGG A A +      G V GSS+A   T G 
Sbjct: 68  LFVLMGSFAGVAGLSEDLYRLAYALVGHRRGGLAMATIGGCAGFGAVCGSSVATAATFGK 127

Query: 267 FTIPLMKRVGF-PGTKAGAVEVAASTNGQLTPP--IMGAAAFLMVEYVGISYVEVIKAAI 323
            ++P M   G+ PG  AG V  +  T G L PP  IM   A L  E +   Y+    AA+
Sbjct: 128 ASLPSMLSRGYSPGFAAGTV-ASGGTLGILIPPSSIMVIYAVLAQELIITLYI----AAL 182

Query: 324 LPALISYI 331
           +PALI+ +
Sbjct: 183 VPALIAVV 190



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 7/186 (3%)

Query: 150 PLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMS--HLWLTTEGVFGVALGVSTSFVFL 207
           P++ +AA+ +     G +     A  GA+L  A +     LT E +    L  +T+   +
Sbjct: 227 PVVALAAIVIGGMAVGVFTATESAAVGAALAFAFAVGRRALTWESLRQALLSTATTSGMI 286

Query: 208 FVLF-GAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGS---SIANVVT 263
           +VL  GA L    A       A        G P  AAVVA     +V+G+    +A +V 
Sbjct: 287 YVLIIGASLFGYFAAVTQAPQALVEGVQASGIPVWAAVVALMAMFIVAGAVFDEVAAMVI 346

Query: 264 TGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAI 323
           +  F +PL+K  GF     G + V     G L PP +G   F++        +  I   +
Sbjct: 347 SMPFVLPLIKSWGFDPVWWGVINVVIIELGMLIPP-LGMNVFVVKGVAPQIPIGAIYRGV 405

Query: 324 LPALIS 329
           +P +IS
Sbjct: 406 MPYVIS 411