Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., C4-dicarboxylate ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score = 76.6 bits (187), Expect = 3e-18
 Identities = 65/205 (31%), Positives = 90/205 (43%), Gaps = 17/205 (8%)

Query: 208 FVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTF 267
           F+L G  L   G     I  A +M+GH  GG   A V+A  L   VSGSS A VV  G+ 
Sbjct: 62  FILAGNFLTHGGVARRMINFATAMVGHWYGGLGLAGVMACALFAAVSGSSPATVVAIGSI 121

Query: 268 TIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEY---VGISYVEVIKAAIL 324
            +P M + GFP      V   +   G L PP     + +MV Y      S   +  A ++
Sbjct: 122 ILPAMVKQGFPNKFGAGVITTSGALGILIPP-----SLVMVMYAVATNTSVGALFMAGVI 176

Query: 325 PALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAV---VYYG 381
           P L+    L  +    A K   +  PR   +T AQ+  +F   I GL +I  V   +Y G
Sbjct: 177 PGLVLATVLGAVTWYIAWK---NDYPRLPPATWAQRFRAFREAIWGLALIVIVIGGIYTG 233

Query: 382 IGWTKEAFGDAATPILTVVLLAAYV 406
           +    EA   AA   +   L+A +V
Sbjct: 234 VFTPTEA---AAMSAVYAFLIAVFV 255



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 551 LMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFG 610
           ++  L+   V+ L+ G  +  ++  ++++ ++ PV + LG +      LI V++ V   G
Sbjct: 312 VIAFLLVVNVLLLVAGNFMEPSSIVLIMAPILFPVAMKLGIDPIHFGILIVVNMEV---G 368

Query: 611 ILADDTPPVGLAAFAAAAIAK 631
           +     PPVGL  + A+ I K
Sbjct: 369 MCH---PPVGLNLYVASGITK 386