Pairwise Alignments

Query, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP transporter large permease from Magnetospirillum magneticum AMB-1

 Score = 72.4 bits (176), Expect = 5e-17
 Identities = 77/274 (28%), Positives = 118/274 (43%), Gaps = 29/274 (10%)

Query: 135 GMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVF 194
           G++LL+   R  +G       A+FL  T  G Y+  V+ H    LN   S L+     V+
Sbjct: 12  GILLLMLVVRIHIG------IAMFLAAT--GIYL--VLNH--GELN---SLLFTLNNLVY 56

Query: 195 GVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVS 254
                   + + LF+L G      G        A +++GH +GG A AA  A    G + 
Sbjct: 57  ARLSNYDLAVIPLFILMGQFATHGGLSKALFHAAGTLIGHFKGGLAYAATAACAAFGAIC 116

Query: 255 GSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAA--AFLMVEYVG 312
           GSS+A   T G   +P + R  + G  A     A  T G L PP +     A L  E +G
Sbjct: 117 GSSLATAATMGQVALPELTRRNYSGRLATGTLAAGGTLGILIPPSVPLVVYAVLTQESIG 176

Query: 313 ISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLC 372
             +V  +   I+ AL  Y+A+I I+     KAG +      +    ++++     I+ + 
Sbjct: 177 KLFVAAVIPGIIAAL-GYMAVIRIIVSLDPKAGPAS-----ERVSLKEMIKAQLGIIPVL 230

Query: 373 VISAVVYYGI--GWTK----EAFGDAATPILTVV 400
           ++  VV  GI  GW       + G AA  I+ VV
Sbjct: 231 LVFLVVIVGIYGGWANPTEAASIGAAACGIIAVV 264



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 86/400 (21%), Positives = 157/400 (39%), Gaps = 94/400 (23%)

Query: 290 STNGQLTPPIMGAAAFLMVEYVG-ISYVEVIKAAILPALI-SYIALIYIVHLEACKAGMS 347
           +T+G L+  +  AA  L+  + G ++Y      A   A+  S +A        A   G  
Sbjct: 77  ATHGGLSKALFHAAGTLIGHFKGGLAYAATAACAAFGAICGSSLAT-------AATMGQV 129

Query: 348 GLPRRHQSTVAQKLLSFTATI---LGLCVISAV--VYYGIGWTKEAFGD--AATPILTVV 400
            LP   +   + +L + T      LG+ +  +V  V Y +  T+E+ G    A  I  ++
Sbjct: 130 ALPELTRRNYSGRLATGTLAAGGTLGILIPPSVPLVVYAV-LTQESIGKLFVAAVIPGII 188

Query: 401 LLAAYVGLVKI------SAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLVWCLT 454
               Y+ +++I       A  A E + + E ++    + P L      L+ +VV+V    
Sbjct: 189 AALGYMAVIRIIVSLDPKAGPASERVSLKEMIKAQLGIIPVL------LVFLVVIV---- 238

Query: 455 VERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGA---- 510
                 G+   WA+                     S+G AA   +     ++VSG     
Sbjct: 239 ------GIYGGWANP----------------TEAASIGAAACGII-----AVVSGGMRFK 271

Query: 511 ---RNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISG-----GNLMLMLIFTAV-I 561
              +++ G  +ATA    V+    L    L +T     ++      G   + ++FT + I
Sbjct: 272 DLKQSVFGTAIATAMIFMVLIGADLLNSALALTQMPAELANWVKNSGMPPVAVLFTIIAI 331

Query: 562 SLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDT----- 616
            ++LG  + + A  ++   +  PV++      GL    ++V     +FGI+A        
Sbjct: 332 YVLLGCVMDSLAMILLTIPIFYPVVL------GLDFYGMSVDDKSIWFGIVALMVVEIGL 385

Query: 617 --PPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFM 654
             PPVG+  +    IAK  P++    G        +LPF+
Sbjct: 386 VHPPVGMNLYVINKIAKDVPLKETAMG--------VLPFL 417