Pairwise Alignments

Query, 1291 a.a., DUF3971 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1266 a.a., conserved membrane protein, predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  478 bits (1230), Expect = e-138
 Identities = 358/1315 (27%), Positives = 589/1315 (44%), Gaps = 105/1315 (7%)

Query: 7    RLGRILMWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQVAIADVQGYWR 66
            RL  IL+    +L+++ AL V+ LRI LP ++ ++ EI + +   + + V  + +   W+
Sbjct: 3    RLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKIESATGMPVEASQLSASWQ 62

Query: 67   NTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADLTVNGLVLDLRAI 126
            N  P+L    ++A   D  +  +    V +  D+ QSL   +    DLT           
Sbjct: 63   NFGPTLEAHDIRAELKDGGEFSVKR--VTLALDVWQSLLHMRWQFRDLTF---------- 110

Query: 127  DWLALEQNPNPKQSR---QGRVVKQLDDLLLRQLDDFTLKNSAILYRTFAGDLRQLDIEK 183
             W    +   P  S           + DL LRQ D F L++S + + T +G   +L I +
Sbjct: 111  -WQLRFRTNTPITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSGQRAELAIPQ 169

Query: 184  LRWQNQGLRHFAEGVVSIAGININSLLVSANFI---DHGSLRDVSGDFYVSADKVRVLPW 240
            L W N   RH AEG+VS++ +     ++        D G L +  G  ++ AD + + PW
Sbjct: 170  LTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSN--GRVWLQADDIDLKPW 227

Query: 241  LTRYLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQTHELLLESGIVE 300
            L ++++D   ++  Q SL  W T++      G V  K     W   +QTH L +++    
Sbjct: 228  LGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQTHTLSVDNLTAH 287

Query: 301  LKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQP------------DEWRLNLSQLNI- 347
            +     GWQ +    R+  D + WP   + + W P            DE R+  S L + 
Sbjct: 288  ITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELA 347

Query: 348  --ENLLPLA-KLIPESQTLNHWLTTLKPKGTLEDVRI-AKGATLESLRYSASLIDGGIAQ 403
              E + PLA KL P    +  W +T +P G +  + +       +  R+ AS  D    Q
Sbjct: 348  GLEGIRPLAAKLSPALGDV--WRST-QPSGKINTLALDIPLQAADKTRFQASWSDLAWKQ 404

Query: 404  WELLPQVNALQAQIQGSPSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYGW 463
            W+LLP        + GS    L+ ASM    +PY  VF+APL I  G   + W     G+
Sbjct: 405  WKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNNNKGF 464

Query: 464  SLWSDKVTVATPDLQALGAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGRELT 523
             L    + V    + A G FR   P +  P+L   A     +  + WRY P   +G++L 
Sbjct: 465  QLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMGKDLV 524

Query: 524  DYLSTAIQAGQVNTAKLIWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPITDLQL 583
            DYLS AIQ G+ + A L++ G    FPY+ + G F+  V L+ AKFAF   WP +T+L +
Sbjct: 525  DYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDI 584

Query: 584  DLLFENDAMYLDSRSATLMEVSAERITGRIPELAELGHIEIEAVASAQQGNAIRNYMMAT 643
            +L F ND +++ +    L  V A  +T  IP+ ++   + I+A      G A+  Y   T
Sbjct: 585  ELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSK-EKLLIDADIKG-PGKAVGPYFDET 642

Query: 644  PLVDSVGAALTTIQVKGPVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDIDTPPMSLTSV 703
            PL DS+GA L  +Q+ G V +   L+IP  +G    A G   L NN++ I     +L ++
Sbjct: 643  PLKDSLGATLQELQLDGDVNARLHLDIPL-NGELVTAKGEVTLRNNSLFIKPLDSTLKNL 701

Query: 704  SGKIEFDNDRVSAAGLDARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWEVKP--LIPFVG 761
            SGK  F N  + +  L A    QP+++DF  ++  + Y V +++ G+W+     ++P   
Sbjct: 702  SGKFSFINSDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEAV 761

Query: 762  ERWLSRVKGHAPWQASVDIQL-NDVGFTYQLDGKADLRGLESRYPFPLKK------ALKV 814
               LS   G   W   V I L    G TY ++   DL+ + S  P PL K      A+ V
Sbjct: 762  NEALS---GSVAWDGKVGIDLPYHAGATYNIELNGDLKNVSSHLPSPLAKPAGEPLAVNV 818

Query: 815  K-----------GQALLQASGNQE-MVSARLQLPQAKYQAEIDLTPKVPVLKATNLVLGQ 862
            K           GQA      N   ++  +L L +A + A+    P +P           
Sbjct: 819  KVDGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIWAADSKTLPPLPEQSG------- 871

Query: 863  GSFKISPVVGHHVQLRSQAFNLDDWLSILNEKPAPKSRKSKLASLNTPAFPMPERVDAAV 922
                        V+L     N  +WL++  +K A +S           A   P+ +    
Sbjct: 872  ------------VELNMPPMNGAEWLALF-QKGAAESVGG--------AASFPQHITLRT 910

Query: 923  KELTFAGLDWHDVDLNARRKDLGWLLNLDSQEIKGQANYIEPYDLSIALERLHLFLPQLE 982
              L+     W+++ + ++    G L+    +EI               ++ L+ + P + 
Sbjct: 911  PMLSLGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLY-YNPSV- 968

Query: 983  AGEEALLVDLDRQKLPLITDFDRKFHQWMPNLTLTIKDFWLQGYKIGQANVDFQRQGDTL 1042
                A          P  T     F  W P+  +   + W  G K G+ + D    GDTL
Sbjct: 969  ----AKTRGDSTPSSPFPTTERINFRGW-PDAQIRCTECWFWGQKFGRIDSDITISGDTL 1023

Query: 1043 LWKSIDFTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGDNNSDLMARFGINSGIQRAPFEI 1102
               +    +G ++L  +G W       RT +   ++G         FG+ + I+++ F +
Sbjct: 1024 TLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNV 1083

Query: 1103 TASTQWDGAPWSMQVNTLQGKVDTKLGKGVISDVS--GAARLLGLFSLDSIIRKMQLDFS 1160
                 W  APW     TL G + T+LGKG I++++   A +LL L S+D+++RK++ DF 
Sbjct: 1084 DYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFR 1143

Query: 1161 DVFDKGMAFDSISGSGELSQGIFVTNNIKMDAVAGEMTIKGLADLNTRTVDAEVNFVPDI 1220
            D F +G  FDSI  +  +  G+  T++  +D +  ++ +KG  +L  R ++ E    P+I
Sbjct: 1144 DTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEI 1203

Query: 1221 TSGIPVLTAFAVTPQTALYVLAITTVISPVVEVFTQVNYEVKGPLDSPTVKELSR 1275
            ++ + V  AFAV P     V A + V+ P+    + + Y + GPLD P + E+ R
Sbjct: 1204 SATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLR 1258