Pairwise Alignments

Query, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

Subject, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

 Score =  274 bits (701), Expect = 1e-77
 Identities = 160/463 (34%), Positives = 258/463 (55%), Gaps = 6/463 (1%)

Query: 5   LLLNVTPSET-RVAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLD 63
           +L+N T  E  RVA+++G  L ++ IE         NIYKGK++R+ P ++AAFVD G +
Sbjct: 4   MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63

Query: 64  KAAFLHASDIVPHTECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTTDI 123
           +  FL   +I         S   +  ++D+   +R+GQ+++VQ+ K+  G KGA LTT I
Sbjct: 64  RHGFLPLKEIAREYFPANYSAHGRPNIKDV---LREGQEVIVQIDKEERGNKGAALTTFI 120

Query: 124 TLPSRYLVFMPGASHVG-VSQRIESEAERERLKKIVSHYCDEHGGFIIRTAAEGANEKEL 182
           +L   YLV MP     G +S+RIE +   E  + + S    E  G I+RTA  G + + L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180

Query: 183 TQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEFENL 242
             D +F  + W  + +         +++ E  +  R  RD++  ++ +ILID+ +  E  
Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240

Query: 243 KEFTSEYV-PELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMT 301
           ++  +    P+ ++K++LY G+ P+F  Y  E++I+ + +R+V L SGG ++ID TEA+T
Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300

Query: 302 TIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVL 361
            IDIN+       ++EET FNTN+EA   IARQLRLR+LGG+I+IDFIDM    H++ V 
Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360

Query: 362 TSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVETVC 421
             L  A+ +DR +  I+  ++ GL+EM+R+R   S+       CP C G G+V+  E++ 
Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420

Query: 422 FEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELE 464
             ILR I       +  +        +A  L  E+  A+  +E
Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463