Pairwise Alignments

Query, 347 a.a., rod shape-determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., Chaperone protein HscA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 63.9 bits (154), Expect = 1e-14
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 42/247 (17%)

Query: 15  IDLGTANTLIYV--KGQGIVLDE-------PSVVAIRQD--------KGRGGKTVAAVGH 57
           IDLGT N+L+     GQ   L +       PSVV  +Q         +    +  A    
Sbjct: 24  IDLGTTNSLVATVRSGQAETLPDHEGRHLLPSVVHYQQQGHTVGYAARDNAAQDTANTIS 83

Query: 58  AAKQMLGRTPGNISAIRP--------------MKD---GVIADFYVTEKMLQHFIRQVHD 100
           + K+M+GR+  +I    P              M D   G++    V+  +L+    +  +
Sbjct: 84  SVKRMMGRSLADIQTRYPHLPYRFKASVNGLPMIDTAAGLLNPVRVSADILKALAARASE 143

Query: 101 NSVLKPSPRVLVCVPCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTG 160
            S+      V++ VP      +R+  +++A  AG   + L++EP AAAI  GL   +   
Sbjct: 144 -SLSGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGKEGV 202

Query: 161 SMVIDIGGGTTEVAVISLNGVVY-----SSSVRIGGDRFDEAIINYVRRNYGSLIGEATA 215
             V D+GGGT +++++ L+  V+          +GGD FD  + +Y+R   G  I + + 
Sbjct: 203 IAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAG--IADRSD 260

Query: 216 EKIKHEI 222
            +++ E+
Sbjct: 261 NRVQREL 267



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 202 VRRNYGSLIGEATAEKIKHEIGSAYPGDDVQEIEVRGRNLAEGVPRSFTLNSNEILEALQ 261
           V+ +YG   GE  A  IK  +  A       E +V+ R LAE       + +  +LE+L 
Sbjct: 498 VKPSYGLTDGEI-ASMIKDSMSFA-------EQDVKARMLAEQ-----KVEAARVLESLT 544

Query: 262 EPLTGIVSAVMVALEQCPPELASDIS 287
             LT   + +  A  QC  + A+ +S
Sbjct: 545 GALTADAALLSAAERQCIDDAAAHLS 570