Pairwise Alignments

Query, 347 a.a., rod shape-determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription (NCBI) from Escherichia coli BW25113

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 40/343 (11%)

Query: 13  LSIDLGTANTLIYVKGQGIV---------LDEPSVVAIRQDKGRGGKTVAAVGHAAKQML 63
           + IDLGT N+LI V   G              PS++++ ++          VG  A    
Sbjct: 8   IGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNH------ILVGKPAVSRR 61

Query: 64  GRTPGNISAIRPMKDG------VIADFYVTEKMLQHFIRQVHDNS---VLKPSPRVLVCV 114
              P   +A+     G      + +D +   ++    +R + +++   + +P   V++ V
Sbjct: 62  TSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSLKEDAEEFLQRPIKDVVISV 121

Query: 115 PCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGAGLRVSEPTGSMVIDIGGGTTEVA 174
           P   +  +R+  R +A  AG   V LI+EP AAA+  GL   + T S+V D+GGGT +V 
Sbjct: 122 PAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQQNTRSLVFDLGGGTFDVT 181

Query: 175 VISLNGVVYSSSVR-----IGGDRFDEAIINYVRRNYG---SLIGEATAEKIKHEIGSAY 226
           V+     V           +GG+ F   +++ V +      + + E+    + +    A 
Sbjct: 182 VLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRADVARTTLNESELAAL-YACVEAA 240

Query: 227 PGDDVQEIEVRGRNLAEGVPRSFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDI 286
              +   + +R +   E   R      NE LE L  PL   ++ + V +EQ   +     
Sbjct: 241 KCSNQSPLHIRWQYQEE--TRECEFYENE-LEDLWLPL---LNRLRVPIEQALRDARLKP 294

Query: 287 SE-NGMVLTGGGALLKDLDRLLMEETGIPVVIADDPLTCVARG 328
           S+ + +VL GG + +  + R+ +   G     + DP T VA G
Sbjct: 295 SQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIVALG 337