Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score = 85.1 bits (209), Expect = 1e-21
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 30/261 (11%)

Query: 3   RGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELREA 62
           RGFTLIE+++ I +LG++ + +  +   +  IY+    R  L+   RF+  R+ +ELR  
Sbjct: 10  RGFTLIELILVITILGVISVSVAQVISLSAQIYITGAERTRLVSDARFIILRLEKELRNV 69

Query: 63  VPNSVIVAN--GCIEFLPIVNSAIYQSLPTNTVNTLRLLPITKSIQAGERLVISPNDPAA 120
           VPNSV   +  GC+ + PI  S  Y     N  N + ++     +   + LVI P +P +
Sbjct: 70  VPNSVSFDSSLGCLSYYPIKESGTYVGDAFN--NPMHVVVFNSQLSKDDTLVIYPTNPQS 127

Query: 121 LRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPANRAYFYTTPVAYC- 179
           +        G+I +  +     P  D       L      T  SP  R +     V  C 
Sbjct: 128 VN-----DNGRIIDDIADAASDPTSDN---QYDLTLSAPNTQSSPGKRFFIPEAQVTVCR 179

Query: 180 ---YQGNSIYRYAGYSLNRTALSPAYLGNGVLMAQSLSGANFSVLAPQLQRNGLVKIELT 236
               QG  + R  G +            +GVL    +S  + +V+   L++NGL+++++T
Sbjct: 180 TSTVQGERLIRTQGAT------------SGVLGTNVVSW-SANVVTAGLRQNGLIELQMT 226

Query: 237 F-ADKGEQVRFDHDALVYNTP 256
             +   EQ+   H+    N P
Sbjct: 227 LQSSDDEQISVVHEVHFPNVP 247