Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein F from Pseudomonas simiae WCS417

 Score =  189 bits (480), Expect = 1e-52
 Identities = 116/404 (28%), Positives = 218/404 (53%), Gaps = 13/404 (3%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + ++G N  G + SG        L    L  +GI P  + + +   S+        L  S
Sbjct: 8   YAWEGINRKGRRVSGQTTGHNPALVKAQLRKQGICPGHVRKKSPVLSS--------LAAS 59

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
           +    + +F RQ+ +L KAG+PLL++   +A+   N+ L+  +  +   +  G +L+ ++
Sbjct: 60  ITSTDITLFTRQLATLLKAGIPLLQAFDIIAEGFDNRALRERVQGLKQAIEAGTSLAEAL 119

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           +  P  F  L+ +++  GE  G L+  L ++A + E+  + + RIK AM YP  V+    
Sbjct: 120 RKQPRCFDELYCNLVAAGEQAGALETLLERVAIHREKSEQLKTRIKKAMTYPITVLVVAS 179

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLP--TRILITTSDFFVN-YWGLLLGIIVGLLFAF 240
           L   +L V V+PQF ++F+  GVD  LP  T  +I  S+F    +W + LG + G L   
Sbjct: 180 LVTGVLLVHVVPQFQNLFA--GVDGKLPGFTLQVIGLSEFMQKAWWAVALGGLAGGLGLR 237

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
            A+    + R+  D   L+ P+ G +++++ ++RFART S   +AGVPL Q+L   A A 
Sbjct: 238 EAYRRLADFRLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGAA 297

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            +    + I +M+  + +G+ ++ + + + +F  + IQM ++GEE+G +D +L +V++ Y
Sbjct: 298 GSGPFRRAIEQMRRDVATGMPLNQSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANHY 357

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDA 404
           + +VD  +  LT  +EP+++V +  +V  L + ++LP++ +  A
Sbjct: 358 EADVDNLVDHLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGSA 401