Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

 Score =  175 bits (444), Expect = 2e-48
 Identities = 108/399 (27%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + Y+  +A+G+  +G VEA ++  A   L ++G+    +     +++A      +L 
Sbjct: 1   MNRYRYEAADANGNVEAGHVEADSQSAAFANLRSRGLTALLVQIEGNQQAAAG---SSLF 57

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
           T  +    L    RQ+ SL  A +PL  ++    +    K +   L +V  ++  G  L+
Sbjct: 58  TAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLA 117

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFV-I 179
            ++   P  F  ++ ++I  GE +G L Q + +LA Y E+    R +I TA  YP  V +
Sbjct: 118 DALAARPRDFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 180 TFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFA 239
             + + +F+L+  V+PQ  S FS+   DLP  T  ++  SDF   + GL    +VG  ++
Sbjct: 178 VSIGIVIFLLSY-VVPQVVSAFSQARQDLPGLTLAMLNASDFVRAWGGLCFAGMVGGFWS 236

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
           +R ++     R+ W    LR+P++G  V     +RFA T +++  AGVPL ++L  + + 
Sbjct: 237 WRLYLRNPVARLSWHSRVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQT 296

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           + N  L Q + +  +++  GV ++       +F P++I +++ GE+TG +  +L   +  
Sbjct: 297 LSNDRLSQCVNDATAKVREGVNLAPALAVEKVFPPVLIHLIASGEKTGALPPMLERAAQT 356

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
             R+++     +TA +EP+++V + A+VLV+ + + LP+
Sbjct: 357 LSRDIERRAMGMTALLEPLMIVVMGAVVLVIVMAVLLPI 395