Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

 Score =  219 bits (559), Expect = 9e-62
 Identities = 118/397 (29%), Positives = 222/397 (55%), Gaps = 12/397 (3%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           F ++G++ +G    G + AA E      L  +G++ + I +                   
Sbjct: 18  FEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGK-----------K 66

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
           +  + + IF RQ+ ++ KAGVPL++S   + +   N  +   L+ + +++  G +LS + 
Sbjct: 67  IKPKDIAIFTRQLATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSMAF 126

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           +  P  F  L+ ++++ GE  G L++ L +LA Y E+    + +IK+A+ YPT VI    
Sbjct: 127 RKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYMEKTEAIKSKIKSALMYPTSVIVVAF 186

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLL-GIIVGLLFAFRA 242
           + + I+ + VIP F  +F+ FG DLP PT  ++  S+FFV+YW L+  G+  G+ F  +A
Sbjct: 187 VVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGLGGGIYFFLQA 246

Query: 243 WVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
           W      +   D   LR+PI G ++ ++ ++R+ RT + M +AG+PL ++L     A  N
Sbjct: 247 WKRNERVQRVMDRALLRVPIFGVLIEKSCVARWTRTLATMFAAGIPLVEALDSVGGASGN 306

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
                   +++ ++ +G +++A   N N+F  +VIQM ++GEE+G ID +L + +DFY+ 
Sbjct: 307 TVYGDATAKIQQEVSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYES 366

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           EVD  +  L++ +EPI++VF+  ++  + + ++LP++
Sbjct: 367 EVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIF 403