Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  197 bits (500), Expect = 6e-55
 Identities = 111/407 (27%), Positives = 210/407 (51%), Gaps = 13/407 (3%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQG---AAEKSAFDFNWK 57
           MA F Y+  +A G    G++E        + L  + +VP  + +    AA   +  F +K
Sbjct: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60

Query: 58  -ALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNG 116
             + TP      L +  RQ+ +L ++G+PL   +R +A+     +++  L +V  ++T G
Sbjct: 61  RGISTPD-----LALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEG 115

Query: 117 RNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPT 176
             LS S+  +P +F  LF SM+  GE +G LD  L +LA Y E   + R +++ AM YP 
Sbjct: 116 YTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPV 175

Query: 177 FVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWG--LLLGIIV 234
            ++ F +  +  L   V+P+    F + G  LP  T+ L+  SDF + +WG  LL+G+++
Sbjct: 176 VLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDF-LQHWGISLLVGLLM 234

Query: 235 GLLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLA 294
            L++  R  +   + R+RWD   + +P++G I      +RFART S+  S+ +P+   + 
Sbjct: 235 -LIYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMR 293

Query: 295 LSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLL 354
           ++ + + N+F++Q++L     +  G ++        +F P+++ M++ GE++G ++ +L 
Sbjct: 294 VAVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLT 353

Query: 355 EVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGM 401
             +D  D   +  +        P L+  +A MVL + +   +P+  M
Sbjct: 354 RAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400