Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (489), Expect = 1e-53
 Identities = 113/408 (27%), Positives = 221/408 (54%), Gaps = 12/408 (2%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           +  + ++G N++G K SG + A +E    + L ++ I    + +G+        +  A L
Sbjct: 9   LKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSV-------SLLARL 61

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
           T  V  + + I  RQ+ ++   GVP++++++ +  N    ++K+ L  +   +  G  LS
Sbjct: 62  THRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLS 121

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            +M+   A F  L+V +++ GE +G L +   +LA Y E+  + R ++  A+ YP+ V+ 
Sbjct: 122 KAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVL 181

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNY--WGLLLGIIVGLLF 238
             L   +++   VIP+F SMF  FG +LP  T+ ++  S +   Y  W  +   I   +F
Sbjct: 182 VALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIA--IAAAIF 239

Query: 239 AFRAW-VNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSA 297
             +A   N+   R++   L L+ PI+G+++ +A +++F+RT +   +AG+P+  SL  +A
Sbjct: 240 GLKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTA 299

Query: 298 EAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVS 357
           +   N   E  I E+     +G+ +     N   F  +V+QM+ +GEE+G++D++L +V+
Sbjct: 300 KTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVA 359

Query: 358 DFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
             Y+ EVD  +  L   +EP+++VF+  +V  L + ++LP++ +M  L
Sbjct: 360 TIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVL 407