Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., type II secretion system F family protein from Ralstonia solanacearum UW163

 Score =  212 bits (540), Expect = 1e-59
 Identities = 119/397 (29%), Positives = 219/397 (55%), Gaps = 12/397 (3%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           F ++G++  G    G + A +      +L  +G+  T   +  A +          +TP 
Sbjct: 30  FEWEGKDRKGKAFKGEMRAESITEVNAVLRKQGLSITKSKRRRAARGK-------KITP- 81

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
              + +  F RQ+ ++ KAGVPLL+S+  +A+   N      L  +  ++ +G +++ + 
Sbjct: 82  ---KDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAF 138

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           + HP  F  L+ ++I  GE  G LD  L +L+ Y E+ +  + +IK+AM YP  V+T   
Sbjct: 139 RRHPKYFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIKSAMIYPISVLTVAF 198

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLL-GIIVGLLFAFRA 242
           L   +L + V+P F ++F+ FG  LP PT +++  SDFFV +W +++   +VG+    RA
Sbjct: 199 LVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMNISDFFVKWWYIIIFAPVVGIFLYARA 258

Query: 243 WVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
           +  +   +       L+MPI G I+ +A ++R+ RT + M SAG PL +S+   A A  N
Sbjct: 259 FKRSLKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGN 318

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
                  LE++  +  G +++      ++F  +V+QM  +GEE+G +D +LL+V++FY+R
Sbjct: 319 WVYHDATLEIQQSVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYER 378

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           EVD  +  ++A IEPI++V +  ++  + + ++LP++
Sbjct: 379 EVDDAVANISALIEPIIIVILGVLIGGMVVAMYLPIF 415