Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., putative protein secretion protein for export from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 7e-45
 Identities = 106/407 (26%), Positives = 204/407 (50%), Gaps = 9/407 (2%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M T+ YQ  +  G      ++A +E  A ++L  +G+        A +    D   +   
Sbjct: 1   MPTYRYQAVDLAGKSHKASLQADSERHARQLLREQGLF-------ARQLQRHDAGSRQPR 53

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              +    L    RQ+ +LT AG+PL+ ++  L +      L + L ++   L  G  L+
Sbjct: 54  RQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGLA 113

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            S+    A F+ L+ ++++ GE +G L Q L +LA + EQ    + + +TA+ YP  ++ 
Sbjct: 114 RSLARQGAPFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYPAVLMG 173

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
             L  +  L   V+P+ T  F+  G  LPL T +LI  S   V+    LLG+ + LL   
Sbjct: 174 VSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGVAL-LLGGL 232

Query: 241 RAW-VNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
             W +   +  +R D L LR+P +G+++   + +R AR+ +++  +GV L ++L ++ E 
Sbjct: 233 AGWLLRKPHWCLRRDQLLLRLPRIGNLLQVLESARLARSLAILCGSGVALLEALQVATET 292

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           I N+ +   + +++  ++ G ++      +  F PL++ M+  GE +G + ++L  V+D 
Sbjct: 293 IGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPPLLVNMVGSGEASGTLADMLERVADD 352

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALK 406
            +R     + T  A  EP++++ + A+VL + L + LP+  +   L+
Sbjct: 353 QERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQGLQ 399