Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Type 4 fimbrial assembly protein PilC from Pseudomonas putida KT2440

 Score =  181 bits (459), Expect = 3e-50
 Identities = 114/398 (28%), Positives = 209/398 (52%), Gaps = 11/398 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           +++ G +A+G+  SG     +       L+ +GI   S+       S   F+       +
Sbjct: 8   YHWHGTDANGAPVSGQTPGRSPAYVRAGLIRQGITVASLRPA----SGLAFSLPKRREKA 63

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
            P      F RQ+ +L KAGVPLL++   + ++  +    A L+ +  ++ +G  L+ ++
Sbjct: 64  DPAG----FSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGLADAL 119

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           Q HPA F  L+ ++++VGE +G LD+ L QLAG  EQ     K+++ AM YP  ++   L
Sbjct: 120 QRHPAWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIYPLLLLLTGL 179

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLL--GIIVGLLFAFR 241
               IL ++VIP+F SMFS  G  LP  T+ +I  S     +  LLL  G+++G+    +
Sbjct: 180 GVSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGLSRFAPLLLVMGVVMGVAVR-Q 238

Query: 242 AWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAID 301
            +      R+      L +P+ G ++ +A L+RFAR+ +    AGVPL  +L   A    
Sbjct: 239 LYRQHAPARLWISRRVLGLPVFGKLLGQAALARFARSLATSYGAGVPLLDALGTVARVTG 298

Query: 302 NKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYD 361
               EQ +L ++  + +G  ++       +F PL++Q+ ++GE +G +D++L + +  Y+
Sbjct: 299 GDLHEQAVLRLRQGMANGQGLNQAMAGEPLFPPLLVQLTAIGESSGTLDQMLEKAASHYE 358

Query: 362 REVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
            +V   L  LT+ +EP +++ +  +V  L + ++LP++
Sbjct: 359 EQVSQALDQLTSLLEPAIVLILGLLVGGLVVAMYLPIF 396