Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system F family protein from Pseudomonas sp. SVBP6

 Score =  206 bits (525), Expect = 8e-58
 Identities = 128/399 (32%), Positives = 216/399 (54%), Gaps = 13/399 (3%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + +QG NA G+  SG   A +  L    L  +GI P  IA          + W+  L   
Sbjct: 8   YNWQGTNAQGALISGQSAARSPALIRAQLRQRGIRPGRIASVRPPL----WQWRRPLDS- 62

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
              + L  F RQ+ +L KAGV LL+++  +AQ+  N  +   L ++  ++  G +L+ ++
Sbjct: 63  ---KALSQFSRQLATLVKAGVALLQALDVVAQSSANPAMARLLGAIKADIAAGSSLATAL 119

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           + HP  F  L+ +++  GE +G L+  L Q+A   EQ    R R+K AM YP  V+    
Sbjct: 120 RRHPHYFDRLYCNLVDAGEQSGSLEVVLAQVAALQEQRQALRARLKKAMTYPLLVLLVGF 179

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFF-VNYWGLLLGIIVGLLFAFRA 242
               +L ++V+P+F S+F  FG +LP  T+ +I  S +   ++W LL  I  G   A   
Sbjct: 180 GVSALLLLEVVPRFQSLFGGFGAELPAFTQQVIGLSQWLGAHFWWLL--ITFGSACAAGV 237

Query: 243 WVNTTNGRIR-W-DHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           W       +R W   L LR+P++G ++  A L+RFART S    AGVPL ++L   A A 
Sbjct: 238 WGYRHKPALRLWLVRLALRLPVLGSLLRHAALARFARTLSTSFGAGVPLVEALGPVAGAC 297

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N   EQ + +++  + SG+A++     + +F  LV+QM ++GE  G +D++L  ++  Y
Sbjct: 298 GNPLYEQALHKVREDLASGLALNVALRASGLFPALVVQMCAIGETAGTLDDMLARIASHY 357

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           ++ +D+ L TLTA IEP++++ +  +V  L + ++LP++
Sbjct: 358 EQAIDHLLDTLTALIEPLIVLILGLLVGSLVIAMYLPIF 396