Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Type II secretion system protein F from Pseudomonas lactucae CFBP13502

 Score =  116 bits (291), Expect = 1e-30
 Identities = 83/348 (23%), Positives = 176/348 (50%), Gaps = 20/348 (5%)

Query: 69  LVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASMQLHPA 128
           L +F +++  L  AG+ L+ ++  L         +  +  +   +  G +LS +MQL P 
Sbjct: 58  LGLFIQELVVLLDAGLVLVEAVETLRDKAPPGVNRQVMSDLLASMYEGNSLSRAMQLKPQ 117

Query: 129 IFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVET-RKRIKTAMRYPTFVITFVLLAMF 187
           +F  L V+ +   E++G+L  AL +   ++E  ++T +KR+  A+ YP  V++   L + 
Sbjct: 118 VFPALLVATVASSEHSGQLAVALRRY-HHFEAHLQTVKKRVSGALMYPLVVLSVGALILL 176

Query: 188 ILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLL-----LGIIVGLLFAFRA 242
            L   VIP+F S+F     DLP   R ++        +WG L     + +++GLL A  A
Sbjct: 177 FLLFFVIPRFASVFDAV-TDLPATARFMV--------WWGALVQARGMELLLGLLLAIGA 227

Query: 243 WV---NTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
            V    +T  + R   L  ++P +G       L+RF RT  ++L  G+P+  +L LS   
Sbjct: 228 LVLLFRSTAFKRRAAGLFWKIPSLGAQRTLFILARFYRTAGMLLMGGMPVVMALQLSGAL 287

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           +  +  +  +    + I++G  +S +     + T +  +++ VGE++G +  +   ++ F
Sbjct: 288 LPPE-RQADLRHAMTDIQAGQPLSMSLARHQLTTAVAERLLRVGEQSGELAAMCERIAQF 346

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           +D  ++  ++  +   EP+L++ V  ++ ++   +++P++ +  +++G
Sbjct: 347 HDEALERAIELFSKVFEPLLMLVVGGLIGLIVFMLYMPIFELAGSIQG 394