Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Paraburkholderia sabiae LMG 24235

 Score =  172 bits (437), Expect = 1e-47
 Identities = 102/398 (25%), Positives = 202/398 (50%), Gaps = 1/398 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  F ++  +A G    G+++A +   A   L  +G+ P  + + AA ++  + + +  L
Sbjct: 1   MPAFRFEAIDAAGKAQKGVLDADSARGARTQLRTQGLTPL-VVEPAATRTRGERSQRLSL 59

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              +      I  RQ+ SL  AG+PL  ++  L +      ++  + ++  E+  G +L+
Sbjct: 60  GRKLSQREQAILTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVLGGHSLA 119

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            ++  HP  F  ++ +++  GE+TG+L   L +LA Y EQ    +++I  A  YPT V  
Sbjct: 120 NALSQHPKDFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIVLAFTYPTIVTI 179

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
                +  L   V+PQ  ++F+     LP  T +++  S F  +YW  +L  +V ++   
Sbjct: 180 IAFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRSYWWAMLIAVVIVVLVV 239

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           R+ ++    R+ +D   L  P+VG +V      RFA T  ++ +AGVP+ ++L  ++E +
Sbjct: 240 RSILSQPGPRLAFDRWTLTAPLVGKLVRGYNTVRFASTLGILTAAGVPILRALQAASETL 299

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N+ +   I +   ++  G ++S    N   F P+++ ++  GE TG +  +L   ++  
Sbjct: 300 SNRAMRGNIDDAIVRVREGTSLSRALGNTKTFPPVLVHLIRSGEATGDVTSMLDRAAEGE 359

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
             E++     LT+ +EP+L++ +  +VLV+ L + LP+
Sbjct: 360 ASELERRTMFLTSLLEPLLILAMGGVVLVIVLAVMLPI 397