Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type IV fimbrial assembly protein PilC from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  224 bits (571), Expect = 4e-63
 Identities = 120/399 (30%), Positives = 219/399 (54%), Gaps = 12/399 (3%)

Query: 2   ATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLT 61
           A F ++G++ +G    G   A  E      L  +GIVP  I +                 
Sbjct: 12  AVFEWEGKDRNGKTVRGETRAVGENQVLAALRRQGIVPGKIKKRRMSSGK---------- 61

Query: 62  PSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSA 121
             +  + + IF RQ+ ++ KAGVPLL++   + +   N  +   L+ +  ++  G +LS+
Sbjct: 62  -RIKPKDIAIFTRQLATMMKAGVPLLQAFDIVGRGNANPSVTKLLNDIRTDVETGTSLSS 120

Query: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181
           + + HP  F  L+ ++++ GE  G L+  L +LA Y E+    + +IK+A+ YP  V+  
Sbjct: 121 AFRKHPLYFDSLYCNLVEAGEAAGILEDLLDRLATYMEKTEALKSKIKSALMYPIAVVIV 180

Query: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGII-VGLLFAF 240
             + + I+ + VIP F  +FS FG DLP PT  +I  S+FF  YW L+ G++  GL F  
Sbjct: 181 AFVVVTIIMIFVIPSFKEVFSSFGADLPAPTLAVIAMSEFFTEYWWLIFGVLGGGLYFFM 240

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           +AW      +   D L L++PI G ++ ++ ++R+ RT + M +AGVPL ++L     A 
Sbjct: 241 QAWRRNEKVQRFMDRLLLKLPIFGVLIEKSVIARWTRTLATMFAAGVPLVEALDSVGGAS 300

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N        +++ ++ +G +++    NAN+F  +V+QM ++GEE+G ID +L + +DFY
Sbjct: 301 GNSVYTIATEKIQQEVSTGTSLTTAMTNANVFPSMVLQMCAIGEESGSIDHMLSKAADFY 360

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           + EVD  +  +++ +EPI++V +  ++  + + ++LP++
Sbjct: 361 ESEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIF 399