Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., protein transport protein HofC from Serratia liquefaciens MT49

 Score =  164 bits (414), Expect = 6e-45
 Identities = 107/403 (26%), Positives = 198/403 (49%), Gaps = 12/403 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           F +Q  +  G    G + +  +   ++ L+ +G+ P  I  G   K      W+      
Sbjct: 7   FLWQAIDPHGQLREGELMSGKKNEVSQWLIEQGLQPCQINSG---KRISPGQWRG----- 58

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
              E L+ F RQ+ +L +AG+PL+  ++ LA    +   +  L  V  ++  G+  S  +
Sbjct: 59  ---EPLIQFTRQLATLLQAGLPLVSGLQLLAAEHPSAAWRCLLREVSEQVRQGQPFSEVI 115

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
               A+F  ++  +I +GE TG LD+  LQLA   E + + +K++  A+RYP F+    L
Sbjct: 116 AEQHAVFPLIYRQLIAIGELTGHLDECCLQLAQQQEAQQKLQKKVIKALRYPLFICAVAL 175

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF-RA 242
           L   ++ V V+P+F  ++  F   LP  T+ L+  S   ++    L  I+V + + + R 
Sbjct: 176 LVSILMLVMVLPEFAGVYQSFNAPLPWFTQGLLNLSTLLIDSGPWLAAILVCMAYTYLRR 235

Query: 243 WVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
                  R R     LR+P++  ++    LS+  R  ++   AG+ L   LA +A ++DN
Sbjct: 236 LHPQPQWRRREQAALLRLPLIAHLIKGGCLSQIFRILAMTQQAGLSLVDGLAAAALSVDN 295

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
            F  Q I  ++ QI  G           +F  L  Q++ VGEE+G +D LL +++ ++++
Sbjct: 296 LFYRQAIDNIRQQISQGQTFHRALEQQALFPTLCQQLVRVGEESGSLDTLLGKLAAWHEQ 355

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
           +      TL   +EP+L++ V  +V  L + ++LP++ + + L
Sbjct: 356 QTFELADTLAQTLEPLLMLVVGGIVGTLVIAMYLPIFQLGNVL 398