Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F from Kangiella aquimarina DSM 16071

 Score =  195 bits (496), Expect = 2e-54
 Identities = 108/410 (26%), Positives = 214/410 (52%), Gaps = 10/410 (2%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSI-----AQGAAEKSAFDFN 55
           MA F Y   +A G +  G++EA T     + L  K + P  +     AQ A EKS+  F 
Sbjct: 1   MAAFEYVALDARGKQKKGVLEADTPRQIRQQLREKDMTPLEVVHIGDAQKAREKSSGGF- 59

Query: 56  WKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTN 115
                 PS+ +  L +  RQ+ +L KA +P+  +++ +A      ++K+ +  V  ++  
Sbjct: 60  ----FKPSIKVADLALVTRQLATLVKAALPIEEALKAVADQTDKGKVKSIILGVRAKVLE 115

Query: 116 GRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYP 175
           G  L+  M   P +F+ L+ SM+  GE  G LD+ L +LA Y E+  +   ++  AM YP
Sbjct: 116 GHTLADGMAEFPNVFNELYRSMVAAGERAGHLDKVLNRLADYTERRQKINSKVSAAMVYP 175

Query: 176 TFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVG 235
             +I   +  +  L V  +P+    F+    +LP+ T+ILI  SDF +NY   +L +++ 
Sbjct: 176 VVLILVAVGVVSGLMVFAVPKVVEQFTHMSQELPVLTKILIGISDFVINYGLYVLILLIL 235

Query: 236 LLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLAL 295
           +    R W+   + + RW    L+MP+ G + +    ++F+ T S++ S+GVPL +++ +
Sbjct: 236 MFIGMRYWLRNEDNKRRWHAKILKMPVFGRLSSNLNTAQFSSTLSILHSSGVPLLEAMNI 295

Query: 296 SAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLE 355
             + + N  + Q + E   ++  G ++      +++F P++I M+  GE +G ++++L +
Sbjct: 296 GGKVLSNLKMRQAVKEAAIKVREGSSLKVALQQSSLFPPMMIHMIGSGEASGELEQMLQQ 355

Query: 356 VSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
           VSD  +   +  +      + P++++ +  MV+ + L + LP++ + +++
Sbjct: 356 VSDNQESLFENSVDVALNIMGPLIILALGGMVMFIVLAMMLPIFELTNSI 405