Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., type II secretion system inner membrane protein GspF from Erwinia tracheiphila SCR3

 Score =  144 bits (362), Expect = 6e-39
 Identities = 85/395 (21%), Positives = 190/395 (48%), Gaps = 6/395 (1%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + +   ++ G +  G +EA +E    ++L  K +   +  Q    ++A     +      
Sbjct: 3   YSFLASDSQGQEIRGTLEANSESHLRDLLREKKMTLLAARQ---RENATGLRRRQQRISD 59

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
             L ++    RQ+ ++  + +PL  ++  +A       +   +  +   + +G +   ++
Sbjct: 60  ADLSLMT---RQLATMVASSMPLDEALHAVAHQSEKPAVVCVVQQLREMVVSGLSFEQAL 116

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
              P  F   + +M+  GE +G L+  LL+LA Y E+    + ++   + YP  +    +
Sbjct: 117 LSFPHTFERFYCAMVAAGEASGYLNVVLLRLAQYIEKRQIMKNKLVQVLLYPALLTLVTI 176

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAW 243
             + IL   V+PQ  S F +  V+LP  TR+L+T SD   ++   ++ +++G L A+R  
Sbjct: 177 GVVTILLTSVVPQVMSQFIQMKVELPWTTRLLLTLSDSIRDFGVPVVAVLMGGLMAWRWS 236

Query: 244 VNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDNK 303
           +      + +    LR+PI G +      +R+A+T  ++ ++ VPL +S+ ++A  + N 
Sbjct: 237 LRKPENMLCFHRRMLRIPIAGRLAREINAARYAKTLCILTASAVPLLESMRIAARVLANS 296

Query: 304 FLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDRE 363
           +  Q++ +   Q+  G ++        +F+P++  M++ GE +G ++++L   +D  D  
Sbjct: 297 YARQQLTDACEQVYEGKSLHQALSATRLFSPMMNHMIAAGERSGELNQMLEHAADLQDEI 356

Query: 364 VDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           +++ L       E  L++ +A+ VL + + I  P+
Sbjct: 357 LNHRLTLSLGIFEQALIIVMASAVLFIIMSILQPI 391