Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., protein transport protein HofC from Erwinia tracheiphila SCR3

 Score =  181 bits (459), Expect = 3e-50
 Identities = 109/404 (26%), Positives = 206/404 (50%), Gaps = 14/404 (3%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           F +Q    +G + +G       + A + LL   ++   +  G   +S  D+ W+  +   
Sbjct: 7   FNWQAIGNEGQRLNGAFFCQHRQEAMDNLLALNLISLKLTSGRRYRS-IDWQWQDKIN-- 63

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
                   F RQ+ +L KAG+ L  +++   +   N   +A L  + + ++NG   S ++
Sbjct: 64  --------FFRQLATLLKAGMSLSDALQLTCEGHSNAGWQALLAHLQHRISNGVPFSDAL 115

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
              P IF PLF ++IQ+GE TGR+D+  LQLA   E++ + +K++  A+RYP  V+   L
Sbjct: 116 TEWPIIFPPLFPALIQIGELTGRMDECCLQLADQQERQHQLQKKVTKALRYPLIVLAIAL 175

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAW 243
           L    + + V+P+F +++  F   LP  T  +I  S+   +Y  L L  +  +  ++R W
Sbjct: 176 LVSLGMLLFVLPEFVAIYQAFDAPLPGFTAAVIALSEAIQHYGPLFLPFLFIIYLSWR-W 234

Query: 244 VN--TTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAID 301
            N  + N + R   + L++P+ GD++   QLSR   T +L   AG+ L  SL    + + 
Sbjct: 235 QNRRSPNWQRRQQQILLKLPLAGDLIRGGQLSRIFMTLALTQHAGLTLLDSLQALEKTLS 294

Query: 302 NKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYD 361
            +   + +  ++  I +G  +     N  +FTPL  Q++ VGEE+G +D +L  +++ Y+
Sbjct: 295 QRLWRETVAALQQHISAGNPLYKAMKNHTLFTPLCYQLVKVGEESGSLDSMLSRLAERYE 354

Query: 362 REVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
              +     L   +EP++++ +  +V  L + ++LP++ +  AL
Sbjct: 355 TSTNELADNLAEALEPVMMIVIGLIVATLVVAMYLPVFNLGSAL 398